View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_10 (Length: 521)
Name: NF17188_low_10
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 41446516 - 41446926
Alignment:
| Q |
13 |
aatatgttatgacgataataaacggttggatcaaagaaattcatagtttatctatgaagcacagacaccttaaggataagtgtccgatagttgtatgata |
112 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446516 |
aatatgttataacaataataaatggttggatcaaagaaattcattgtttatctatgaagcacagacaccttaaggataagtgtccgatagttgtatgata |
41446615 |
T |
|
| Q |
113 |
tatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41446616 |
tatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatat |
41446715 |
T |
|
| Q |
213 |
atgacacacgtaagacacgtgttgatcaaactaaaacaagtatccnnnnnnnttattttaacaaaccttacactctcattggacacatctacaacatgtt |
312 |
Q |
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| T |
41446716 |
atgacagacgtacgacacgtgttgatcaaactaaaacaagtatccaaaaaaattatttcaacaaaccttacactctcattggacacatctacaacatgtt |
41446815 |
T |
|
| Q |
313 |
gttgaggtaataaaagttgagtacaataactttagcctttgttttagcctttgtaatagtagatgtaaatggataaataaaagtcaaatactatgttatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446816 |
gttgaggtaataaaagttgagtacaataactttagcctttgatttagcctttgtaatagtagatgtaaatggataaataaaagtcaaatactatgttatt |
41446915 |
T |
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| Q |
413 |
atatttttctc |
423 |
Q |
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| T |
41446916 |
atatttttctc |
41446926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 41446968 - 41447035
Alignment:
| Q |
438 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctg |
505 |
Q |
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| T |
41446968 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatcctgggacaatgtcatggagaaatctg |
41447035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 41455294 - 41455370
Alignment:
| Q |
13 |
aatatgttatgacgataataaacggttggatcaaagaaattcatagtttatctatgaagcacagacaccttaaggat |
89 |
Q |
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| T |
41455294 |
aatacgttatgacaataataaatggttggatcaatgaaattcattgtttatctatgaagcacagacacctaaaggat |
41455370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 438 - 491
Target Start/End: Original strand, 41457150 - 41457203
Alignment:
| Q |
438 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatcctgggacaatgt |
491 |
Q |
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| T |
41457150 |
ctacatagtcatcaagaaccagagagcacgcaacatagcatcttgggacaatgt |
41457203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 41455418 - 41455532
Alignment:
| Q |
112 |
atatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatg |
211 |
Q |
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||||||||||| ||| ||| |||| |||| |||| || | ||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||| |
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| T |
41455418 |
atatgtacgacatgtgttagaaatctgagacaagcgtcctaacaaaatttgttttttcttccttttcacac--tccttcaatca--gtgtcagaaacata |
41455513 |
T |
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| Q |
212 |
tatgacacacgtaagacac |
230 |
Q |
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| T |
41455514 |
catgacacacgtacgacac |
41455532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 41456923 - 41457007
Alignment:
| Q |
228 |
cacgtgttgatcaaactaaaacaagtatccnnnnnnnttattttaacaaaccttacactctcattggacacatctacaacatgtt |
312 |
Q |
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||||||| | ||||||||| |||||||||| |||| || ||||||||||||||| | |||||||||||||||||||||| |
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| T |
41456923 |
cacgtgtcggtcaaactaagacaagtatccgaaagacttatctttacaaaccttacactcgccttggacacatctacaacatgtt |
41457007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16419554 - 16419484
Alignment:
| Q |
19 |
ttatgacgataataaacggttggatcaaagaaattcatagtttatctatgaagcacagacaccttaaggat |
89 |
Q |
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| T |
16419554 |
ttatgacaataataaacagttggatcaatgaaattcattgtttatctatgaagcacagacacctaaaggat |
16419484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 257
Target Start/End: Complemental strand, 16419437 - 16419303
Alignment:
| Q |
112 |
atatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatg |
211 |
Q |
| |
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||||||||||| ||| ||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| ||| ||| |
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| T |
16419437 |
atatgtacgacatgtgttagaaatttgagacaagtgtcccaacgaaatttgttttttcttccttttcgcac--tccttcaatcaatgt---------atg |
16419349 |
T |
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| Q |
212 |
tatgacacacgtaagacacgtgttgatcaaactaaaacaagtatcc |
257 |
Q |
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|||||||||||| ||||||||| | ||||||||| |||||||||| |
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| T |
16419348 |
catgacacacgtacgacacgtgtcggtcaaactaagacaagtatcc |
16419303 |
T |
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