View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_12 (Length: 487)
Name: NF17188_low_12
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 33975863 - 33976266
Alignment:
| Q |
1 |
ttaggattgagacttgttcaattttgtttttt-------aaattactattattttctctcaaattaacgcttacgttgttcatgtttgttcctaacattg |
93 |
Q |
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| T |
33975863 |
ttaggattgagacttgttcaatttttattttttttttaaaaattactattattttctctcaaattaacgcttacgttgttcatgtttgttcctaacattg |
33975962 |
T |
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| Q |
94 |
ttcaaaggttttattggcacaggttacatggtggttgcctgtgttggaaagaatgtgcatgaggagtaatgttcttggtcattgaagatattctcgttac |
193 |
Q |
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| T |
33975963 |
ttcaaaggttttattggcacaggttacatggtggttacctgtgttggaaagaatgtgcatgaggagtaatgttcttggtcattgaagatattctcgttac |
33976062 |
T |
|
| Q |
194 |
caaagaattgacaagggttggtggattcatggtgttttatttatgaaaggaagacgaacaaagttatataattgtttagtagaaatgagtatatgtaaaa |
293 |
Q |
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| T |
33976063 |
caaagaattgacaagggttggtggattcatggtgttttttttatgaaaggaagacgaacaaagttat---------------aattgagtatatgtaaaa |
33976147 |
T |
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| Q |
294 |
tatggatgaaagatgtgtttaagtttctaatgatttcacaaatcaaaggttgaagaggaataatggaagggttatttgttttctaattagtactgcatca |
393 |
Q |
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| T |
33976148 |
tatggatgaaagatgtgtttaagtttctaatgatttcacaaatcaaaggttgaagaggaataatggaagggttatttgttttctaattagtactgcatca |
33976247 |
T |
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| Q |
394 |
atagtatataatgtcatac |
412 |
Q |
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| T |
33976248 |
atagtatataatgtcatac |
33976266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 33976282 - 33976315
Alignment:
| Q |
437 |
tagtatttctcatgcaaaatgcaatgcaaaatat |
470 |
Q |
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| T |
33976282 |
tagtatttctcatgcaaaatgcaatgcaaaatat |
33976315 |
T |
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