View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_13 (Length: 464)
Name: NF17188_low_13
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 67 - 447
Target Start/End: Original strand, 5792044 - 5792426
Alignment:
| Q |
67 |
tcagaactgttagtaatagatagttcagttttttt-ggttgggttgagttcagcattcggnnnnnnnnnnnnnnnatccacccaggtaatcatgtcatgt |
165 |
Q |
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| T |
5792044 |
tcagaactgttaataatagatagttcagttttttttggttggattcagttcagcattcggttttttgttttttttatccacccaggtaatcatgtcatgt |
5792143 |
T |
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| Q |
166 |
gatgtgaagtataatttgtgtctcctatatattgcttgtatttctagcacaaaacttacaattgcaaatcagagtttgaatatgattttgatactggttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5792144 |
gatgtgaagtataatttgtgtctcctatatattgcttgtatttctagcacaaaacttacaattgcaaatcagagtttgaatatgattttgatactggttg |
5792243 |
T |
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| Q |
266 |
tcggttgatatatacatttttagttaacaaaaagaaatactaacaggttaac-aactaataattatataataactaataattgacttattgattagatac |
364 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5792244 |
tcggttgatatatacatttttagttaacaaaaagcaatactaacaggttaacaaactaataattatataataactaataattgacttattgattatatac |
5792343 |
T |
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| Q |
365 |
tctggcccattttgctagaccaaaaatctaactaaatcttcaatttcttattgtttgaatataggaccaaccaatgattaaaa |
447 |
Q |
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| T |
5792344 |
tctggcccattttgctagaccaaaaatctaactaaatcttcaatttcttattgtttgaatataggaccaaccaatgattaaaa |
5792426 |
T |
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