View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_19 (Length: 391)
Name: NF17188_low_19
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 7723847 - 7723485
Alignment:
| Q |
19 |
gtacgtaccatgagttgttgttgttgt---gatggtggtggtggttatacatcgaagctgactccattacgccaatagatggcgctgtcgctgtgccggc |
115 |
Q |
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| T |
7723847 |
gtacgtaccatgagttgttgttgttgttgtgatggtggtggtggttatacatcgaagctgactccattacgccaatagatggcgctgtcgctgtgccagc |
7723748 |
T |
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| Q |
116 |
ggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaaattgaaactatcaaaagattgaa |
215 |
Q |
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| T |
7723747 |
ggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaatt-ccattcaaattgaaactatcaaaagattgaa |
7723649 |
T |
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| Q |
216 |
ataaagttatatatttggaatgtatatatttagagtannnnnnnnacctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagt |
315 |
Q |
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| T |
7723648 |
ataaagttatata-tagttatat-tatatttagagtattttttttacctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagt |
7723551 |
T |
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| Q |
316 |
ttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
381 |
Q |
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| T |
7723550 |
ttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
7723485 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
126 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
192 |
Q |
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| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
261 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
349 |
Q |
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| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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