View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_low_20 (Length: 390)
Name: NF17188_low_20
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 39223348 - 39222984
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacggcatttacgactatcttcatgcttataagcattgtagtgtatgaccttgcttttg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39223348 |
agaagaatgggaccacattttgatatccctccggcatgtctcacggcatttacaactatcttcatgcttataagcattgtagtgtatgaccttgcttttg |
39223249 |
T |
|
| Q |
110 |
tgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcaccgc |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39223248 |
tgcccatgatccggcgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcactgc |
39223149 |
T |
|
| Q |
210 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39223148 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcag |
39223049 |
T |
|
| Q |
310 |
tttgccttgacagggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
374 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39223048 |
tttgccttggctgggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
39222984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 39193995 - 39193631
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacggcatttacgactatcttcatgcttataagcattgtagtgtatgaccttgcttttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| | || |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39193995 |
agaagaatgggaccacattttgatatccctccagcctgtttaacaacatttaaaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
39193896 |
T |
|
| Q |
110 |
tgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcaccgc |
209 |
Q |
| |
|
| || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| || |
|
|
| T |
39193895 |
ttccaataatccggcgatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgaacatcgctataatggtcactgc |
39193796 |
T |
|
| Q |
210 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39193795 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattccccttactatttttattctcctccctcag |
39193696 |
T |
|
| Q |
310 |
tttgccttgacagggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
374 |
Q |
| |
|
|||||| || |||||||||| ||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
39193695 |
tttgccctgggagggattgctaataccttcgtggaaattgccaagttagagttcttctatgatca |
39193631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 39215731 - 39215456
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacggcatttacgactatcttcatgcttataagcattgtagtgtatgaccttgcttttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
39215731 |
agaagaatgggaccacattttgatatccctccagcatgtctcacagcatttacaactatcttcatgcttataagcattatagtctatgaccttgcttttg |
39215632 |
T |
|
| Q |
110 |
tgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcaccgc |
209 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
39215631 |
tgccaatgatccggagatacacaaagaaccccagagggatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
39215532 |
T |
|
| Q |
210 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctc |
285 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39215531 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgacatgatacaattcccctc |
39215456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 39177271 - 39176910
Alignment:
| Q |
13 |
agaatgggaccacattttgatatccctccggcatgtctcacggcatttacgactatcttcatgcttataagcattgtagtgtatgaccttgcttttgtgc |
112 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
39177271 |
agaatgggaccccattttgatattcctccggcgtgtctgacagcatttgtaactatcttcatgcttataagcattgtagtctatgaccgtgtttttgtgc |
39177172 |
T |
|
| Q |
113 |
ccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcaccgcatg |
212 |
Q |
| |
|
| |||| || || |||||||||||||||||||| || ||| || | || ||||||||||||||||| ||| ||||| | |||||||||||| ||||| |
|
|
| T |
39177171 |
cagtgattcggcggtacacaaagaaccccagagggataacaatgctacaaagactaggaattggccttgtgctgcacgtcattataatggtcactgcatg |
39177072 |
T |
|
| Q |
213 |
cttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcagttt |
312 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||||||||| |||||| || |||| || |||||||||||||| || || |||||| |
|
|
| T |
39177071 |
tttggctgagaggaagcgactaagtgttgcaagagaaaatggtctctttggccagcatgacacccttcctcttactatttttattctgctaccccagttt |
39176972 |
T |
|
| Q |
313 |
gccttgacagggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
374 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||||||| | || ||||||||||||| |
|
|
| T |
39176971 |
gccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatca |
39176910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 105 - 374
Target Start/End: Complemental strand, 39238920 - 39238651
Alignment:
| Q |
105 |
ttttgtgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtc |
204 |
Q |
| |
|
||||||||| |||||||||| ||||| || || || |||||||||||| | | || ||| ||||||||||||| |||||| |||| || | | ||| |
|
|
| T |
39238920 |
ttttgtgcctatgatccgactctacactaaaaatcctagaggaatcacaatactacaaagaataggaattggccttgtgttgaacatcattacattagtc |
39238821 |
T |
|
| Q |
205 |
accgcatgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctcc |
304 |
Q |
| |
|
| |||||||||| |||||| ||||||||| ||||||||||||||| |||||||| | | |||||||| || || || |||||||| || ||||||| |
|
|
| T |
39238820 |
attgcatgcttggttgagagaaagagactcaatgttgcaagagaaaaaaacctcttagacatgcatgataagatccctcttactattttcatcctcctcc |
39238721 |
T |
|
| Q |
305 |
ctcagtttgccttgacagggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || ||| |||||||| | ||||||||||| ||||| |
|
|
| T |
39238720 |
ctcagtttgccttgtcagggattgctgataacttcgtcgaagttgccaagatggagttcttctacgatca |
39238651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 374
Target Start/End: Complemental strand, 39256928 - 39256620
Alignment:
| Q |
66 |
tatcttcatgcttataagcattgtagtgtatgaccttgcttttgtgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagaga |
165 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | ||||||||| || |||| | || ||||||||||| ||||| |||||| | | |||||| |
|
|
| T |
39256928 |
tatcttcatgctgataagcattgtagtctatgatcgtgcttttgttcctgtgattaggtcctatacaaagaaccctagagggatcacaatcctacagaga |
39256829 |
T |
|
| Q |
166 |
ctaggaattggcctagtgttgcacattgctataatggtcaccgcatgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggcc |
265 |
Q |
| |
|
|||||| ||||||| |||||| || | | ||| | | ||| | |||| |||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
39256828 |
ctaggagttggccttacattgcacgttattgtgatgcttattgcaagtttggttgagaggaagagactcaatgttgcaagagaaaacaacctcttaggcc |
39256729 |
T |
|
| Q |
266 |
ggcatgatacaattcccctcactatttttattctcctccctcagtttgccttgacagggattgctgataactttgttgaaattgccaagttagagttctt |
365 |
Q |
| |
|
|||||||||| | || || |||||||| |||| | ||||| ||||| || ||||| ||||||||| ||||||||||||||| ||| | ||||| || |
|
|
| T |
39256728 |
tgcatgatacactacctcttactattttcgctctctttcctcaatttgctttagcaggggttgctgatagctttgttgaaattgctaagatggagttttt |
39256629 |
T |
|
| Q |
366 |
ctatgatca |
374 |
Q |
| |
|
|||||||| |
|
|
| T |
39256628 |
ttatgatca |
39256620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 362
Target Start/End: Complemental strand, 39260128 - 39259884
Alignment:
| Q |
118 |
atccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcaccgcatgcttgg |
217 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| |||||| || | |||||||||||||||||||| ||| ||||| | | ||||| | |||||| | |
|
|
| T |
39260128 |
atccgacgctacacgaagaatcctagagggatcacaatgctacagagactaggaattggccttgtgatgcacgtcattgtaatgattgttgcatgcctta |
39260029 |
T |
|
| Q |
218 |
ctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcagtttgcctt |
317 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| || || |||| || |||||||| || || |||||||| |||||| ||||||| || || || |
|
|
| T |
39260028 |
tcgagagaaagagactcagtgttgcaagagaaaacaatcttttaggcccgctcgatacaataccacttactattttcattctcgtccctcaattcgcttt |
39259929 |
T |
|
| Q |
318 |
gacagggattgctgataactttgttgaaattgccaagttagagtt |
362 |
Q |
| |
|
|| ||||||||||||| ||||| || ||||| ||| ||||||| |
|
|
| T |
39259928 |
gatggggattgctgatacgtttgtggatattgctaagctagagtt |
39259884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 374
Target Start/End: Complemental strand, 39244603 - 39244449
Alignment:
| Q |
220 |
gagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcagtttgccttga |
319 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| || || ||| || ||||||| || || ||||||| |||||| ||||||| || || |||| |
|
|
| T |
39244603 |
gagaggaagagactcaatgttgcaagagaacacaatcttttaggcaagctcgatacaacccctctttctattttcattctcgtccctcaattcgctttga |
39244504 |
T |
|
| Q |
320 |
cagggattgctgataactttgttgaaattgccaagttagagttcttctatgatca |
374 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
39244503 |
tggggattgctgatacgtttgtggaaattgctaagatagagttcttctatgatca |
39244449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 39244745 - 39244634
Alignment:
| Q |
78 |
tataagcattgtagtgtatgaccttgcttttgtgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggc |
177 |
Q |
| |
|
|||||||| |||| | ||||| | || |||||| || || |||||||| ||||||||||| || |||||||| ||| || | || ||| ||||||||||| |
|
|
| T |
39244745 |
tataagcactgtaatctatgatcgtgtttttgttcctattatccgacgctacacaaagaatccaagaggaattacaatgctacaaagaataggaattggc |
39244646 |
T |
|
| Q |
178 |
ctagtgttgcac |
189 |
Q |
| |
|
|| ||||| ||| |
|
|
| T |
39244645 |
cttgtgtttcac |
39244634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 39250688 - 39250583
Alignment:
| Q |
70 |
ttcatgcttataagcattgtagtgtatgaccttgcttttgtgcccatgatccgacgatacacaaagaaccccagaggaatcacactgtttcagagactag |
169 |
Q |
| |
|
|||||| |||||||||||||| | ||||| ||| |||||| || || |||||||| ||||| |||| || |||||||| ||| || | || ||||||| |
|
|
| T |
39250688 |
ttcatggttataagcattgtaatctatgattttgtttttgttcctattatccgacgctacac--agaatccaagaggaattacaatgctacaaagactag |
39250591 |
T |
|
| Q |
170 |
gaattggc |
177 |
Q |
| |
|
|||||||| |
|
|
| T |
39250590 |
gaattggc |
39250583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University