View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17188_low_25 (Length: 344)

Name: NF17188_low_25
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17188_low_25
NF17188_low_25
[»] chr1 (42 HSPs)
chr1 (13-326)||(32882460-32882767)
chr1 (16-316)||(34774961-34775262)
chr1 (16-316)||(27102281-27102572)
chr1 (20-316)||(10785152-10785447)
chr1 (16-288)||(31290740-31291010)
chr1 (87-315)||(46768343-46768566)
chr1 (17-245)||(16577352-16577579)
chr1 (16-106)||(6583117-6583207)
chr1 (140-305)||(16148990-16149155)
chr1 (18-160)||(27031687-27031827)
chr1 (147-316)||(32863237-32863406)
chr1 (18-165)||(7857747-7857893)
chr1 (18-165)||(24659023-24659168)
chr1 (16-110)||(16147648-16147742)
chr1 (20-120)||(41126362-41126462)
chr1 (109-316)||(11439711-11439919)
chr1 (16-137)||(9313179-9313298)
chr1 (18-227)||(46814246-46814454)
chr1 (52-132)||(52278430-52278509)
chr1 (84-198)||(46692627-46692739)
chr1 (260-316)||(9313031-9313087)
chr1 (52-198)||(5459289-5459434)
chr1 (84-198)||(24449738-24449850)
chr1 (205-314)||(2987816-2987924)
chr1 (85-198)||(5389230-5389340)
chr1 (264-316)||(376497-376549)
chr1 (256-316)||(38544407-38544467)
chr1 (203-290)||(6582968-6583055)
chr1 (231-305)||(52278589-52278661)
chr1 (268-315)||(42374526-42374573)
chr1 (199-316)||(46603636-46603751)
chr1 (254-316)||(41126142-41126204)
chr1 (266-315)||(50588964-50589014)
chr1 (271-316)||(17033939-17033984)
chr1 (85-198)||(41920619-41920730)
chr1 (269-316)||(37200485-37200532)
chr1 (147-238)||(38548845-38548934)
chr1 (260-314)||(38546876-38546930)
chr1 (266-306)||(19598990-19599031)
chr1 (123-251)||(38544511-38544637)
chr1 (147-187)||(24684310-24684350)
chr1 (254-314)||(27905760-27905819)
[»] chr2 (37 HSPs)
chr2 (17-316)||(10173270-10173567)
chr2 (16-316)||(7696052-7696351)
chr2 (16-298)||(37770359-37770633)
chr2 (16-316)||(34230291-34230591)
chr2 (17-235)||(16952154-16952372)
chr2 (17-235)||(17022819-17023037)
chr2 (17-235)||(17060125-17060343)
chr2 (171-316)||(4974990-4975135)
chr2 (171-316)||(4992898-4993043)
chr2 (18-223)||(14106305-14106509)
chr2 (20-227)||(5254352-5254553)
chr2 (18-227)||(387268-387476)
chr2 (16-234)||(1269573-1269787)
chr2 (21-218)||(7874388-7874583)
chr2 (98-316)||(12342992-12343195)
chr2 (18-198)||(39338674-39338853)
chr2 (84-223)||(7460836-7460974)
chr2 (19-224)||(41086572-41086785)
chr2 (240-316)||(13337565-13337640)
chr2 (84-191)||(17116694-17116800)
chr2 (52-198)||(10524228-10524373)
chr2 (154-316)||(41113431-41113590)
chr2 (16-79)||(13337364-13337427)
chr2 (269-316)||(22884805-22884852)
chr2 (270-316)||(33788316-33788362)
chr2 (260-325)||(4472277-4472342)
chr2 (269-316)||(27740331-27740378)
chr2 (145-315)||(29139642-29139813)
chr2 (18-167)||(14405292-14405441)
chr2 (256-316)||(2063208-2063269)
chr2 (195-318)||(29997215-29997337)
chr2 (266-316)||(25504579-25504629)
chr2 (240-298)||(41086513-41086570)
chr2 (266-316)||(24165867-24165917)
chr2 (272-310)||(29487447-29487485)
chr2 (255-316)||(16952035-16952096)
chr2 (255-316)||(17022700-17022761)
[»] chr7 (36 HSPs)
chr7 (16-285)||(24324520-24324788)
chr7 (17-306)||(3478443-3478729)
chr7 (16-176)||(8745243-8745405)
chr7 (16-316)||(6716427-6716727)
chr7 (16-301)||(1320885-1321169)
chr7 (18-165)||(34390056-34390202)
chr7 (145-316)||(33719185-33719355)
chr7 (18-198)||(47325693-47325873)
chr7 (18-227)||(35745601-35745813)
chr7 (16-316)||(42532950-42533244)
chr7 (17-251)||(23983298-23983530)
chr7 (18-227)||(44353345-44353552)
chr7 (84-198)||(31971942-31972054)
chr7 (191-285)||(6492852-6492946)
chr7 (85-198)||(38306423-38306534)
chr7 (85-227)||(3867278-3867415)
chr7 (200-316)||(16828791-16828906)
chr7 (18-198)||(5860096-5860276)
chr7 (85-161)||(6585043-6585118)
chr7 (211-315)||(16954775-16954878)
chr7 (271-316)||(28534195-28534240)
chr7 (13-66)||(36449171-36449224)
chr7 (18-153)||(33435203-33435337)
chr7 (269-316)||(13312180-13312227)
chr7 (199-258)||(28534277-28534336)
chr7 (265-315)||(36674809-36674859)
chr7 (281-316)||(22567783-22567818)
chr7 (18-191)||(37795082-37795255)
chr7 (256-322)||(9107481-9107547)
chr7 (260-306)||(26385858-26385903)
chr7 (16-66)||(44755679-44755729)
chr7 (265-318)||(8745469-8745521)
chr7 (260-316)||(25438691-25438748)
chr7 (17-66)||(48058595-48058644)
chr7 (256-316)||(23983574-23983634)
chr7 (18-62)||(41089691-41089735)
[»] scaffold0050 (1 HSPs)
scaffold0050 (16-316)||(36799-37097)
[»] chr5 (36 HSPs)
chr5 (16-315)||(26045655-26045955)
chr5 (77-314)||(13953941-13954178)
chr5 (16-306)||(8297558-8297851)
chr5 (32-316)||(26405239-26405520)
chr5 (16-318)||(14302133-14302421)
chr5 (186-316)||(30097593-30097723)
chr5 (120-316)||(7682747-7682943)
chr5 (85-227)||(7161795-7161935)
chr5 (16-316)||(25992097-25992391)
chr5 (16-204)||(33258682-33258873)
chr5 (20-137)||(7195112-7195227)
chr5 (90-272)||(21398054-21398236)
chr5 (193-294)||(7195014-7195114)
chr5 (251-316)||(24071952-24072017)
chr5 (168-316)||(10174923-10175069)
chr5 (154-294)||(33109913-33110050)
chr5 (16-106)||(7391937-7392028)
chr5 (84-198)||(18593404-18593516)
chr5 (16-94)||(21402749-21402828)
chr5 (86-297)||(7391709-7391917)
chr5 (266-314)||(31742504-31742552)
chr5 (18-198)||(29087575-29087752)
chr5 (203-314)||(31721950-31722058)
chr5 (266-316)||(8731278-8731328)
chr5 (84-186)||(34378259-34378359)
chr5 (170-223)||(5656878-5656931)
chr5 (274-315)||(27713421-27713462)
chr5 (260-317)||(33258579-33258636)
chr5 (84-175)||(698522-698611)
chr5 (145-227)||(18313425-18313504)
chr5 (229-297)||(37108103-37108170)
chr5 (255-314)||(25657813-25657871)
chr5 (17-64)||(39024385-39024432)
chr5 (202-316)||(5187219-5187332)
chr5 (272-306)||(23426646-23426680)
chr5 (266-306)||(6159827-6159866)
[»] scaffold0063 (1 HSPs)
scaffold0063 (16-316)||(58217-58518)
[»] chr8 (32 HSPs)
chr8 (77-316)||(10248256-10248497)
chr8 (17-325)||(12197757-12198058)
chr8 (17-325)||(12442185-12442486)
chr8 (16-137)||(17656873-17656993)
chr8 (140-311)||(17656432-17656603)
chr8 (18-189)||(38577606-38577777)
chr8 (149-314)||(8862314-8862481)
chr8 (85-271)||(43312375-43312558)
chr8 (18-227)||(20138519-20138726)
chr8 (20-191)||(31207177-31207348)
chr8 (18-186)||(35816066-35816230)
chr8 (205-314)||(41790961-41791070)
chr8 (84-198)||(41893210-41893322)
chr8 (18-198)||(37986666-37986846)
chr8 (71-161)||(15821224-15821313)
chr8 (266-314)||(30235809-30235857)
chr8 (52-189)||(9519627-9519764)
chr8 (269-316)||(17720398-17720444)
chr8 (45-103)||(8862505-8862563)
chr8 (203-249)||(30235889-30235935)
chr8 (52-198)||(24995202-24995348)
chr8 (269-316)||(9831694-9831741)
chr8 (16-66)||(10248494-10248544)
chr8 (171-277)||(22325826-22325931)
chr8 (85-191)||(34388822-34388925)
chr8 (269-314)||(5215000-5215044)
chr8 (84-161)||(12898120-12898195)
chr8 (145-198)||(16457283-16457336)
chr8 (17-66)||(17720647-17720696)
chr8 (140-227)||(36631039-36631123)
chr8 (256-304)||(5221506-5221553)
chr8 (266-302)||(10552609-10552645)
[»] chr4 (36 HSPs)
chr4 (16-316)||(16832711-16833012)
chr4 (16-298)||(41117677-41117958)
chr4 (16-233)||(48098423-48098641)
chr4 (35-304)||(19311069-19311346)
chr4 (16-314)||(38636927-38637224)
chr4 (17-314)||(19814910-19815210)
chr4 (18-189)||(31050478-31050648)
chr4 (16-252)||(25753262-25753500)
chr4 (18-205)||(35341141-35341325)
chr4 (17-204)||(19673191-19673377)
chr4 (55-315)||(49747657-49747917)
chr4 (16-137)||(49528162-49528282)
chr4 (18-163)||(2825877-2826020)
chr4 (16-316)||(22810864-22811151)
chr4 (146-298)||(39420745-39420896)
chr4 (20-106)||(39420914-39421000)
chr4 (16-113)||(53823314-53823412)
chr4 (16-68)||(2061677-2061729)
chr4 (260-316)||(28967209-28967265)
chr4 (18-197)||(8255120-8255299)
chr4 (18-197)||(8268538-8268717)
chr4 (265-318)||(48098645-48098698)
chr4 (145-278)||(53823151-53823281)
chr4 (267-316)||(46487621-46487670)
chr4 (270-320)||(35336914-35336964)
chr4 (203-249)||(43373864-43373910)
chr4 (264-316)||(42719494-42719546)
chr4 (87-198)||(8705952-8706061)
chr4 (249-316)||(25754199-25754265)
chr4 (260-314)||(38930122-38930177)
chr4 (270-316)||(35947998-35948044)
chr4 (212-297)||(2061542-2061627)
chr4 (131-204)||(20464796-20464869)
chr4 (274-314)||(19432386-19432426)
chr4 (110-190)||(30964624-30964702)
chr4 (274-314)||(43373784-43373824)
[»] chr3 (46 HSPs)
chr3 (16-196)||(14879526-14879708)
chr3 (36-316)||(4170855-4171134)
chr3 (18-189)||(23328167-23328337)
chr3 (27-316)||(37123482-37123760)
chr3 (16-302)||(28937427-28937705)
chr3 (46-316)||(50518780-50519047)
chr3 (18-189)||(45398890-45399060)
chr3 (16-316)||(25647776-25648073)
chr3 (18-189)||(40023389-40023559)
chr3 (18-227)||(43012469-43012677)
chr3 (19-314)||(7104936-7105232)
chr3 (17-189)||(39021094-39021267)
chr3 (145-300)||(48893060-48893214)
chr3 (145-313)||(14194154-14194317)
chr3 (18-197)||(20611876-20612054)
chr3 (18-227)||(53247993-53248200)
chr3 (18-198)||(47235791-47235971)
chr3 (211-316)||(14280240-14280343)
chr3 (16-105)||(14755166-14755255)
chr3 (18-227)||(19176596-19176806)
chr3 (254-318)||(46358071-46358135)
chr3 (260-314)||(14893264-14893318)
chr3 (16-316)||(33143643-33143939)
chr3 (18-198)||(34475564-34475742)
chr3 (254-314)||(1652569-1652628)
chr3 (18-191)||(2392321-2392494)
chr3 (147-251)||(25594304-25594406)
chr3 (86-209)||(9583852-9583972)
chr3 (231-296)||(41039463-41039527)
chr3 (84-191)||(2394085-2394190)
chr3 (167-299)||(12086483-12086615)
chr3 (18-122)||(21342629-21342733)
chr3 (84-198)||(30352249-30352359)
chr3 (256-316)||(32010117-32010177)
chr3 (32-102)||(14194040-14194109)
chr3 (274-316)||(14754974-14755016)
chr3 (17-65)||(46358328-46358376)
chr3 (206-249)||(1652648-1652691)
chr3 (84-163)||(17551113-17551190)
chr3 (18-161)||(31482977-31483119)
chr3 (260-298)||(25594217-25594255)
chr3 (41-197)||(37998971-37999125)
chr3 (191-236)||(32010027-32010072)
chr3 (52-196)||(45163983-45164126)
chr3 (199-251)||(27399218-27399270)
chr3 (260-316)||(37998900-37998956)
[»] chr6 (15 HSPs)
chr6 (16-316)||(20701488-20701794)
chr6 (16-316)||(15120293-15120588)
chr6 (16-198)||(3880404-3880589)
chr6 (254-316)||(17278153-17278215)
chr6 (77-186)||(13423603-13423716)
chr6 (242-316)||(6860348-6860423)
chr6 (41-250)||(32935099-32935305)
chr6 (84-198)||(10541993-10542105)
chr6 (84-191)||(14663238-14663343)
chr6 (203-318)||(26215711-26215826)
chr6 (260-318)||(3880301-3880359)
chr6 (274-314)||(12794465-12794505)
chr6 (17-55)||(20500011-20500049)
chr6 (255-297)||(20500282-20500323)
chr6 (274-314)||(26534424-26534464)
[»] scaffold0200 (1 HSPs)
scaffold0200 (16-234)||(19473-19687)
[»] scaffold1384 (1 HSPs)
scaffold1384 (140-311)||(1347-1522)
[»] scaffold0119 (1 HSPs)
scaffold0119 (16-234)||(41915-42129)
[»] scaffold1613 (2 HSPs)
scaffold1613 (256-316)||(686-746)
scaffold1613 (123-251)||(790-916)
[»] scaffold0343 (1 HSPs)
scaffold0343 (84-204)||(5867-5985)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 32882460 - 32882767
Alignment:
Q  13 ggttttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggact 112  Q
    ||||||||||||||| || |||| |||| |||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  32882460 ggttttctttcggtgaatcggagatcgacaggtggtgaaagcttaatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgttgaggact 32882559  T
Q  113 gggagttttaattttgaggggtgttcgttggtgg-tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    |||        |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  32882560 gggg-------ttttgaggggtgttcgttggggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcag 32882652  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32882653 ttttaggcggtgatgtatattttggtgggtgttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagttt 32882752  T
Q  312 gtattttttgattcc 326  Q
    ||||||| |||||||    
T  32882753 gtattttctgattcc 32882767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 34774961 - 34775262
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttc-gaatgtggctcagctttggtgttgaggactg 113  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||  |||||| |||||| ||||| | |||||||||||||||||||||||||| ||    
T  34774961 tttctttcggtgaattggaggttgagaggtggtggaagctgattgattgtttcagataggagtttttccggatgtggctcagctttggtgttgaggattg 34775060  T
Q  114 ggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||||| | |||| | ||||||| | |||| ||||||||||||||| ||||  ||| |||| |||| ||||||||  ||||||| ||||||||||| ||    
T  34775061 ggagttt-attttttacgggtgtttcattgg-ggtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcgttttcgtgaaggagtctgt 34775158  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| | ||| || |||||||||| ||||||||||||  ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34775159 tttaggtgatgacgtgtattttggtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 34775258  T
Q  313 tatt 316  Q
    ||||    
T  34775259 tatt 34775262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 27102281 - 27102572
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| |||| ||||    
T  27102281 tttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataggagcgtttcg-ttgtggctcagctttagtgttcaggaatggg 27102379  T
Q  116 agttttaattttgagggg----tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    | ||  | ||||||||||    | ||| |||| ||||||||||||||||| ||| |||||||| |||| |||||||||   ||||| ||||| |  || |    
T  27102380 atttggatttttgaggggtattttttctttgg-ggtgagtagtgacgatgagtggtgttggatttcgtttttacagtggctgttttcgtgaaagtatctg 27102478  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    ||||||| |         ||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  27102479 ttttagggg---------attttggtgggtgttgtcctca-tggtgt-ttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgttt 27102567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 10785447 - 10785152
Alignment:
Q  20 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagt 118  Q
    ||||||||| | |||||||| |||||||||||||||||||||| || || | |||||||||||||  || ||||| |||||||| | |||||||| |||     
T  10785447 tttcggtggttcggaggtcgcgaggtggtggaagctgaatgattttctctgataggagcttttcgggtgcggctctgctttggtatcgaggactgagag- 10785349  T
Q  119 tttaattttgaggggtgttcgttg-gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 217  Q
    |||| ||||||||||||||  ||| | | |||||||||||||||||||  |||||||||||| ||| |||   ||||||| ||||||||||| ||||||     
T  10785348 tttatttttgaggggtgtttcttgcgggatgagtagtgacgatgggtg--gttggatatcgttttttcagatgtcgttttcgtgaaggagtctgttttaa 10785251  T
Q  218 gcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    | | | |  | ||||||| || ||||||||||||  ||||| ||||| ||||||||| || |||||||||| || | |||||||  |||||||||||||    
T  10785250 gtgataacatgtattttgatgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcgtttttagtttgtatt 10785152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 31291010 - 31290740
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |||||||||||||||||||||   || || |    
T  31291010 tttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctaga-tgag 31290912  T
Q  116 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
       |||| |||| |||||||   ||| |||  |||||||||||||||||| ||  ||||| |||| | ||||||||| ||||||| | ||||||||| |     
T  31290911 ccgtttattttttaggggtgtttttctttgagggtgagtagtgacgatggatg--gttggctatcatttttacagtggtcgttttcgcgaaggagtctga 31290814  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg 288  Q
    |||||| |||||||| || | ||  | |  |||||||||| ||||| ||||| |||||||||||||||||||||||    
T  31290813 tttaggtggtgatgtgta-tatgaagggaattgtcctcaggggtgt-ttttatggtgtttattttcgggtgttccg 31290740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 87 - 315
Target Start/End: Original strand, 46768343 - 46768566
Alignment:
Q  87 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    |||||| |||||||||||| |||| ||||||||| | | ||||||| | ||   | |||| |||||||||||||||||||   ||||||||||||         
T  46768343 gtggcttagctttggtgttcaggattgggagttt-agtcttgagggttttttttctttgggggtgagtagtgacgatgggcagtgttggatatcg----- 46768436  T
Q  184 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtg 283  Q
       ||| ||||||| ||||||||||| |||||||| ||||| ||  ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||    
T  46768437 ---gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtg 46768533  T
Q  284 ttccgcctatatac-ggcgcctttagtttgtat 315  Q
    ||||||||| |||| ||||||||| ||||||||    
T  46768534 ttccgcctacatacgggcgccttttgtttgtat 46768566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 16577352 - 16577579
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||    ||||||||||||| |||||||||| |||||||| ||  |||||  |    
T  16577352 ttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggtgactgaaa 16577451  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    | |||  ||| ||||||||||| || |  |||||||| |||||||  || |  |||||||| | |||  |||| ||||||| ||||| ||||| ||||||    
T  16577452 g-tttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgtttta 16577550  T
Q  217 ggcggtgatgtatattttggtgagtgttg 245  Q
    || | |||||| |||||||||| ||||||    
T  16577551 ggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 6583207 - 6583117
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 106  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  6583207 tttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtgttg 6583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 305
Target Start/End: Original strand, 16148990 - 16149155
Alignment:
Q  140 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 239  Q
    |||| ||||||||||||||||||||| | ||||||||||| ||| ||||  ||||||   |||||| ||| |||||||| ||||| || |||||| | |     
T  16148990 ttgggggtgagtagtgacgatgggtgcttttggatatcgttttt-cagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtattttagcgg 16149088  T
Q  240 g-tgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctt 305  Q
    | | |||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16149089 gcttttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 27031827 - 27031687
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||| || ||| | || |||||||||||||||||||||| || | |||||| | |||||||    
T  27031827 tctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggag 27031728  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgat 160  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||    
T  27031727 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgat 27031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 316
Target Start/End: Complemental strand, 32863406 - 32863237
Alignment:
Q  147 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 246  Q
    ||||| ||||||||| ||| ||   ||||||||||||||| || ||||||| ||| |||| || |||||||||||||| || ||| |||||| |||||||    
T  32863406 tgagttgtgacgatgagtggtgcgagatatcgtgtttacaatggtcgttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgt 32863307  T
Q  247 cctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||   ||||| |||   ||||||||||||| ||||||||||||||||||| | | |||||||||||||    
T  32863306 cctcttgggtgtttttcttggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtatt 32863237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 7857747 - 7857893
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| || ||||||||||| ||||||||||  ||  | ||| | |||||||||||  |||||||||||| || |||||||| | |||||||    
T  7857747 tctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgttgaagtctgggag 7857846  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 165  Q
    |||| ||||||||||||||||  ||| ||||||||||| |||||||||    
T  7857847 tttt-attttgaggggtgttctatgggggtgagtagtggcgatgggtg 7857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 24659023 - 24659168
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||||||||||||| ||||||||   ||| || ||| | ||| |||||||||||||||||||||| | || ||| ||  |||||||    
T  24659023 tctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagcctgggagttaagt-ctgggag 24659121  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 165  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||||    
T  24659122 tttta-ttttgaggggtgttatttgggggtgagtagtgacgatgggtg 24659168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 16147648 - 16147742
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagga 110  Q
    ||||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  16147648 tttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtgtagagga 16147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 41126462 - 41126362
Alignment:
Q  20 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 119  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||  | ||||||||||||  |||||| ||| |||||||| ||||||||| |||||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  120 t 120  Q
    |    
T  41126362 t 41126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 316
Target Start/End: Complemental strand, 11439919 - 11439711
Alignment:
Q  109 gactgggagttttaattttgaggggtgtt---cgttggtggtg-agtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 204  Q
    |||||||||||| |||| |||||||||||   | |||| |||| ||||||||||||  ||| ||||||||||| | ||||| ||| | | ||| ||||||    
T  11439919 gactgggagttt-aattctgaggggtgtttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttacggtggttgctttcgtgaag 11439821  T
Q  205 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 304  Q
    |  || |||||||| ||||| || ||||||||||  ||||||| |||| ||  |  |||||||||||||||||||| ||||||| ||||||| | |||||    
T  11439820 ggatctgttttaggtggtgacgtgtattttggtggatgttgtcttcagggggat--tttagggtgtttattttcggatgttccgtctatatatgtcgcct 11439723  T
Q  305 ttagtttgtatt 316  Q
    || |||||||||    
T  11439722 tttgtttgtatt 11439711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 9313298 - 9313179
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||| || ||||||||| || || |||||| ||||  || ||| |||||| |||||||||||||||||| || |||||||||    
T  9313298 tttctttcggtggatcggaggtggataggtggtggcagttgtatgatccttcaaatacgagtttttcggatgtggctcagctttggt-ttcaggactggg 9313200  T
Q  116 agttttaattttgaggggtgtt 137  Q
    || ||||||||||| |||||||    
T  9313199 ag-tttaattttgaagggtgtt 9313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 46814454 - 46814246
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| ||| |||||||||| |  ||||||| | | || |||   ||||||||||||||||||||||| || | |||||||| |  ||||||    
T  46814454 tctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggag 46814355  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 217  Q
    |||| |||| ||||||||||  |||| ||||||||||||||||||  | |  ||||||  |||||||||| | | |||| ||| |||| ||| || ||||    
T  46814354 tttt-atttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttag 46814256  T
Q  218 gcggtgatgt 227  Q
    | ||||||||    
T  46814255 gtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 52278430 - 52278509
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggg 132  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  52278430 agctgcatgatctttcagataggagtttttcggatgtggctcaactttgatgttgaggactgggag-tttaattttgaggg 52278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 46692739 - 46692627
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | ||||||||||||    
T  46692739 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgttt 46692642  T
Q  184 acagtgctcgttttt 198  Q
    |||||||| ||||||    
T  46692641 acagtgcttgttttt 46692627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 9313087 - 9313031
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtatt 9313031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 5459289 - 5459434
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 150  Q
    ||||| |||||| ||||| |||| ||| || ||| ||||||||||||| ||||||| || |||| ||||||| |||||| || ||||| |||  ||||||    
T  5459289 agctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagtttta-ttttgatgg-tgttctttgtgggtgag 5459386  T
Q  151 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||||||||| | || |||||| ||||||||||||| | ||||||    
T  5459387 tagtgacgatgggcggtggtggataccgtgtttacagtgattgttttt 5459434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 24449850 - 24449738
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    |||| |||||||||| ||||||| || || ||||||||| ||||||||| ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  24449850 aatgcggctcagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 24449753  T
Q  184 acagtgctcgttttt 198  Q
    |||||||| ||||||    
T  24449752 acagtgcttgttttt 24449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 2987924 - 2987816
Alignment:
Q  205 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 304  Q
    |||||||||||||  |||||||| |||||||||| ||||||    ||| ||||| |||   ||||||| ||||||| ||||||||||||||||||||||     
T  2987924 gagtcagttttagtgggtgatgtttattttggtgggtgttgattgcaggggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgcc- 2987826  T
Q  305 ttagtttgta 314  Q
    ||||||||||    
T  2987825 ttagtttgta 2987816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 5389340 - 5389230
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||||||||| ||||||| || |||||||||||| ||||||||| ||||| |||   |||||||||||||||||| | || |||||| ||||||||    
T  5389340 atgtggctcagcttgggtgttggggtctgggagtttta-ttttgaggg-tgttc-ttgtaagtgagtagtgacgatgggcggtggtggataccgtgttta 5389244  T
Q  185 cagtgctcgttttt 198  Q
    | ||||| ||||||    
T  5389243 cggtgcttgttttt 5389230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 376549 - 376497
Alignment:
Q  264 agggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgcctttactttgtatt 376497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 38544467 - 38544407
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| |||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  38544467 tgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtatt 38544407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 6583055 - 6582968
Alignment:
Q  203 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcc 290  Q
    ||||||| |||||||| ||||| || |||||||||| ||||| || |||   |||| ||||| |||||||||||||||||||||||||    
T  6583055 aggagtctgttttaggtggtgacgtgtattttggtgggtgttatcatcatgagtgttttttatggtgtttattttcgggtgttccgcc 6582968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 52278589 - 52278661
Alignment:
Q  231 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctt 305  Q
    |||||||| ||||||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||    
T  52278589 ttttggtgggtgttgtcctc-gtggtgtctttaagg-tgtttattttcaggtgttccgcctatatatggcgcctt 52278661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 42374526 - 42374573
Alignment:
Q  268 tgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||    
T  42374526 tgtttattttcgggtgttccgcctatatatggcgccctttgtttgtat 42374573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 46603636 - 46603751
Alignment:
Q  199 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt-attttcgggtgttccgcctatatac 297  Q
    |||||| |||| |||||||  |||||| | |||||||||| |||||||| |||| |||  |||||| | ||||| |||||||||||||||||||||||||    
T  46603636 gtgaagaagtctgttttagatggtgattt-tattttggtgggtgttgtcttcaggggt--cttttatgatgttttattttcgggtgttccgcctatatac 46603732  T
Q  298 ggcgcctttagtttgtatt 316  Q
      || |||| |||||||||    
T  46603733 aacgtcttttgtttgtatt 46603751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 41126204 - 41126142
Alignment:
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||   |||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  41126204 ggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgtatt 41126142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 50589014 - 50588964
Alignment:
Q  266 ggtgtttatt-ttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  50589014 ggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 17033939 - 17033984
Alignment:
Q  271 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  17033939 ttattttcgggtgttccgcttatatacgacgccttttgtttgtatt 17033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 41920619 - 41920730
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||||||||| ||||||| || || |||||||| ||||||| |||||||  |||  |||||||||||||||| || | || || ||| ||||||||    
T  41920619 atgtggctcagcttgggtgttggggtcttggagtttt-attttga-gggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgttta 41920716  T
Q  185 cagtgctcgttttt 198  Q
    || |||| ||||||    
T  41920717 cattgcttgttttt 41920730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 37200485 - 37200532
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtatt 37200532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 38548934 - 38548845
Alignment:
Q  147 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 238  Q
    ||||||||||||||||||| |  || ||||||| ||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| ||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgt-ttttcagtgatcg-tttcgtgaaagagtctgttttaggtggtgatgtttattttggtg 38548845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 38546930 - 38546876
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||| ||| ||||||||||| ||||||||||||||||| | | |||||||||||    
T  38546930 ttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgta 38546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 19598990 - 19599031
Alignment:
Q  266 ggtgttta-ttttcgggtgttccgcctatatacggcgccttt 306  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  19598990 ggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 38544637 - 38544511
Alignment:
Q  123 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 221  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  38544637 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 38544541  T
Q  222 tgatgtatattttggtgagtgttgtcctca 251  Q
    |||||| ||||||||||  |||||||||||    
T  38544540 tgatgtttattttggtgtatgttgtcctca 38544511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 24684350 - 24684310
Alignment:
Q  147 tgagtagtgacgatgggtgatgttggatatcgtgtttacag 187  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttacag 24684310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 27905760 - 27905819
Alignment:
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||||||| ||||||||||||   ||||||| |||||||||| ||||| |||||||||    
T  27905760 ggtgtcttttatggtgtttatttt-ttgtgttccacctatatacgacgcctctagtttgta 27905819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 10173567 - 10173270
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||||||    || |||||||||| ||||||||||||||||||||||||||||| ||    
T  10173567 ttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgaggactgaga 10173468  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    |||| |||||||||| || ||| |||| ||||||||||||||||| ||| ||||| ||||||| ||||||||  |||||||  |||||  ||| ||||||    
T  10173467 gttt-aattttgaggagtattctttgg-ggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcgttttcatgaagacgtctgtttta 10173370  T
Q  217 ggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||| ||||  | ||||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||    
T  10173369 ggccgtgacatgtattttgatgggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtatt 10173270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 7696052 - 7696351
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||| | |||||| |||  | |||||||||| |||||||||| |||||  ||    
T  7696052 tttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccagg 7696151  T
Q  116 agttttaattttgaggggtgttcgtt---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||||| |||| |||||||||  |    ||  |||||||||||||||| |||  |||| ||||| | |||||| || ||||||| ||||||||||   |    
T  7696152 agttttattttt-aggggtgtttttctaagggagtgagtagtgacgatgagtg--gttgaatatcatttttacattggtcgttttcgtgaaggagtttat 7696248  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| |||||||| |||||||||| ||||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||  ||||| |||||    
T  7696249 tttaggtggtgatgtgtattttggtgggtgttgtcctcgggggtgt-ttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttg 7696347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 37770633 - 37770359
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||||||||| || |||||||||  | ||||||| ||||||||||| ||| ||| |    
T  37770633 tttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcagatatgagcttttctgaggtggctcggctttggtgttcaggtctgtg 37770534  T
Q  116 agttttaattttgagggg---tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    || |||||||||||||||   | ||| |||| || |||||||||||| ||||| |||||||        ||| |||| | ||||| ||||||||||| ||    
T  37770533 ag-tttaattttgagggggttttttctttgggggcgagtagtgacgacgggtggtgttgga--------ttatagtggtggttttcgtgaaggagtctgt 37770443  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 298  Q
    |||||| ||||| ||  ||||||||| ||| | ||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  37770442 tttaggtggtgacgtggattttggtgggtggtatcctca-tggtgt-ttttagggtgtttattttcgggtgttccgcctatatacg 37770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 34230291 - 34230591
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||  || |||||||||  |||||||||| |||||||||| ||||||  |    
T  34230291 tttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtgtttaggact--g 34230388  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    | ||||  |||| | |||||    ||| |||| ||||||||||  ||| ||||| ||||||||||||| |||| |||| ||||||| ||| | ||||| |    
T  34230389 aatttttttttttatgggtgttttttctttggaggtgagtagttgcgacgggtgttgttggatatcgtttttatagtggtcgttttcgtggaagagtctg 34230488  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
     |||||  ||||| || ||||||||||  |||||| || || ||||| ||||| | ||||||||||  |||||||||||||||||||||| |||| ||||    
T  34230489 -tttagatggtgacgtgtattttggtggatgttgttctaaggggtgt-ttttacgatgtttattttttggtgttccgcctatatacggcgtcttttgttt 34230586  T
Q  312 gtatt 316  Q
    |||||    
T  34230587 gtatt 34230591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 16952372 - 16952154
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  16952372 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 16952273  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 215  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  16952272 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 16952174  T
Q  216 aggcggtgatgtatattttg 235  Q
    | | |||||||| |||||||    
T  16952173 aagtggtgatgtttattttg 16952154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 17023037 - 17022819
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17023037 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17022938  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 215  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  17022937 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 17022839  T
Q  216 aggcggtgatgtatattttg 235  Q
    | | |||||||| |||||||    
T  17022838 aagtggtgatgtttattttg 17022819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 17060343 - 17060125
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17060343 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17060244  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 215  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  17060243 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 17060145  T
Q  216 aggcggtgatgtatattttg 235  Q
    | | |||||||| |||||||    
T  17060144 aagtggtgatgtttattttg 17060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 171 - 316
Target Start/End: Original strand, 4974990 - 4975135
Alignment:
Q  171 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 270  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4975089  T
Q  271 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4975090 ttattttcgggtgttcagcctatatacgacgcctttagtttgtatt 4975135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 171 - 316
Target Start/End: Original strand, 4992898 - 4993043
Alignment:
Q  171 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 270  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4992997  T
Q  271 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4992998 ttattttcgggtgttcagcctatatacgacgcctttagtttgtatt 4993043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 14106509 - 14106305
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    |||||||||||||  ||||||||||||| ||||||| || |||||| ||| | || ||||||| ||||||||||||||||| |||||||| | ||| |||    
T  14106509 tctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagag 14106410  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 217  Q
    |||| |||||||||||||||| |||| ||||||||||||||||| ||| |  ||||||  ||||||||| || | |||| ||| |||| ||| || ||||    
T  14106409 tttt-attttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttag 14106311  T
Q  218 gcggtg 223  Q
    | ||||    
T  14106310 gtggtg 14106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 5254352 - 5254553
Alignment:
Q  20 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 119  Q
    ||||||||||| |||||||||||||| |||||||||| ||| || ||| | | ||||||||||||||||||||||| || |||||||| | ||| |||||    
T  5254352 tttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtt 5254451  T
Q  120 ttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggc 219  Q
        ||||||||||||||| |||  ||||||||||||||||||||| |  ||||||  |||||||||||| | |||| ||| |||| ||| || |||||     
T  5254452 ----ttttgaggggtgttctttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggt 5254545  T
Q  220 ggtgatgt 227  Q
    ||||||||    
T  5254546 ggtgatgt 5254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 387268 - 387476
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactggga 116  Q
    ||||| ||||||| |||||||  |||||  ||||||||| ||| || |||||  ||| ||| ||||| | |||||||||||| ||||||| || ||||||    
T  387268 tcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctggga 387367  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    |||||| ||||||||| ||||| |||| ||||| ||||||||||||| | || || || | ||||||||| |||| ||||||||||||||||| ||||||    
T  387368 gtttta-ttttgaggg-tgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtgaaggagtctgtttta 387465  T
Q  217 ggcggtgatgt 227  Q
    || ||||||||    
T  387466 ggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 1269573 - 1269787
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 114  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |      
T  1269573 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt-- 1269670  T
Q  115 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 214  Q
    ||  |||| |||| | |||| ||  |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  ||||    
T  1269671 gaagtttatttttaaagggtatttcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttt 1269767  T
Q  215 taggcggtgatgtatatttt 234  Q
    |||| |||||||| ||||||    
T  1269768 taggtggtgatgtgtatttt 1269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 7874388 - 7874583
Alignment:
Q  21 ttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttt 120  Q
    |||||||||| |||||||||||||| |||||| ||   || || ||  | |||||||||||||||||||||||||||| |||||||| | || |||||||    
T  7874388 ttcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagttt 7874487  T
Q  121 taattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 218  Q
    | |||||||||| ||||| |||| ||||||||||||||||||||| |  ||||||  |||||||||||| | |||| ||| |||| ||| || |||||    
T  7874488 t-attttgagggatgttctttgg-ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttagg 7874583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 12342992 - 12343195
Alignment:
Q  98 ttggtgttgaggactgggagttttaattttgaggggtgttcgttggtgg-tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 196  Q
    ||||||||||||||||||||||| | ||||||||||||||  |||| || ||||||||||||||| |||  |||||||||||| ||||||| | ||||||    
T  12342992 ttggtgttgaggactgggagttt-atttttgaggggtgtttcttggggggtgagtagtgacgatgagtg--gttggatatcgtttttacagaggtcgttt 12343088  T
Q  197 ttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 296  Q
    | ||||||||||| |||||||| ||||| || ||||||| ||  ||||||||||||             |||||||||||||||||||||||||| | ||    
T  12343089 tcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatgttgtcctcag-------------ggtgtttattttcgggtgttccgcctttgta 12343175  T
Q  297 cggcgcctttagtttgtatt 316  Q
     | || ||||||||||||||    
T  12343176 agacgtctttagtttgtatt 12343195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 39338853 - 39338674
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaat-gtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| ||||||| ||| |||||||| |||||||||| |||||    
T  39338853 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctggg 39338754  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| |||||| | ||||||||||||| ||||||    
T  39338753 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggata-cttgtttacagtgcttgttttt 39338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 7460836 - 7460974
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| |||||||| | |||||||||||| ||||||||||||||| |||| | ||||||||||||||| ||| |  ||||||| ||||||    
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagtttta-ttttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgttt 7460934  T
Q  184 acagtgctcgtttttgtgaaggagtcagttttaggcggtg 223  Q
    |||||| | |||| ||| |||| ||| || ||||||||||    
T  7460935 acagtgtttgtttctgttaaggtgtccgtcttaggcggtg 7460974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 41086785 - 41086572
Alignment:
Q  19 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg-ttgaggactgggag 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||| | ||||| |||  |||||| | || |||| || |||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtgactctactttggagtttcaggattgcgag 41086686  T
Q  118 ttttaattttgaggggtgttcgtt--------ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtc 209  Q
     ||| |||||||||||||||  ||        ||||  |||||||||||||||||| | ||||||||||| |||| |||| ||| ||| || |||| |||    
T  41086685 -tttgattttgaggggtgttttttctttggggggtgaggagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtc 41086587  T
Q  210 agttttaggcggtga 224  Q
     |||||||| |||||    
T  41086586 tgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 13337565 - 13337640
Alignment:
Q  240 gtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||    
T  13337565 gtgttgtcctcaggggtgt-ttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtatt 13337640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 17116800 - 17116694
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || ||| ||||||| |||||||||| ||||| |||  |||||||| |||||||||| | || |||||| |||||||    
T  17116800 aatgtggctcagcttgggtgttggggtctgagagtttttattttgaggg-tgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgttt 17116702  T
Q  184 acagtgct 191  Q
    ||||||||    
T  17116701 acagtgct 17116694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 10524228 - 10524373
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 150  Q
    ||||| |||||| ||| | |||| ||| ||||| |||||||||||||| ||||||| ||  |||||||||||  ||||  |||||||| |||  ||||||    
T  10524228 agctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagtttta--tttggagggtgttctttgtgggtgag 10524325  T
Q  151 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||||||||| | || |||||| ||||||||| ||||| ||||||    
T  10524326 tagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttt 10524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 316
Target Start/End: Complemental strand, 41113590 - 41113431
Alignment:
Q  154 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 253  Q
    |||||||| ||| ||| ||||||||| | |||| |  ||||||| ||||||||||| ||||||||  || | || |||||||||| |||    |||||      
T  41113590 tgacgatgagtgctgtgggatatcgtttgtacaatagtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgc---cctcatg 41113494  T
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||   | ||||||||||||||    
T  41113493 ggtgttttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtatt 41113431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 13337364 - 13337427
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagctt 79  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||||||||| |||||||||    
T  13337364 tttctttcggtggataggaggtcgagaggtggtgaacactgaatgatctttcagataggagctt 13337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 22884852 - 22884805
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcctttagtttgtatt 22884805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 33788362 - 33788316
Alignment:
Q  270 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtatt 33788316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 4472277 - 4472342
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttgattc 325  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||| | ||||||    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattc 4472342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 27740331 - 27740378
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgcctttagtttgtatt 27740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 29139813 - 29139642
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg---cggtgatgtatattttggtgagt 241  Q
    ||||||||||||| |  |||||||||| ||||||| |||  |||| | ||||||||||| |||||  |||||||   |||||| || ||||||||||  |    
T  29139813 ggtgagtagtgacaactggtgatgttgaatatcgt-tttttagtggttgtttttgtgaaagagtctcttttaggtgacggtgacgtgtattttggtggat 29139715  T
Q  242 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    |||||  |||||||||| ||||| ||| |||||||||| ||||||| |  ||||||| |||||||  |||||||    
T  29139714 gttgttttcagaggtgt-ttttaaggtatttattttcgagtgttccactaatatacgacgccttttatttgtat 29139642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 14405292 - 14405441
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    |||||||||||||  || |||||| ||| |||||| ||| | | || ||  | ||||||||| ||| |||||||||  ||| |||||||| | |||||||    
T  14405292 tctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggag 14405391  T
Q  118 ttttaattttgaggggtgttc-gttggtggtgagtagtgacgatgggtgat 167  Q
    |||| |||||||||| |||||  |||| ||||||||||||| |||||||||    
T  14405392 tttt-attttgagggatgttcttttgggggtgagtagtgacaatgggtgat 14405441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 2063208 - 2063269
Alignment:
Q  256 tgtcttttagggtgtttatttt-cgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||| ||||| |||||||||    
T  2063208 tgtcttttatggtgtttatttttcgggtgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 29997215 - 29997337
Alignment:
Q  195 ttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctata 294  Q
    |||| ||||||| || |||||||  ||||| ||||||||| ||  | || |||||||| | ||  ||||||| ||||||||||||| |||||||| ||||    
T  29997215 ttttatgaaggaatctgttttagatggtgacgtatattttagtaggagtggtcctcagggatga-ttttaggatgtttattttcggatgttccgcttata 29997313  T
Q  295 tacggcgcctttagtttgtatttt 318  Q
    ||||| |||||| |||| ||||||    
T  29997314 tacggtgccttttgtttttatttt 29997337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 25504629 - 25504579
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  25504629 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 41086570 - 41086513
Alignment:
Q  240 gtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 298  Q
    |||||||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  41086570 gtgttgtcttcaggggtgt-ttttagggtatttattttcgggtgtttcgcctatatacg 41086513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 24165917 - 24165867
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||| |||||||||||||||||||||||| | | ||||||| ||||||    
T  24165917 ggtgtttgttttcgggtgttccgcctatatacagtgtctttagtctgtatt 24165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 29487447 - 29487485
Alignment:
Q  272 tattttcgggtgttccgcctatatacggcgcctttagtt 310  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttagtt 29487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 16952096 - 16952035
Alignment:
Q  255 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||| | |||||||||| || ||||| ||||||||||| || || |||||||||||    
T  16952096 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtatt 16952035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 17022761 - 17022700
Alignment:
Q  255 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||| | |||||||||| || ||||| ||||||||||| || || |||||||||||    
T  17022761 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtatt 17022700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 24324788 - 24324520
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||| ||||| | |    
T  24324788 tttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgttcaggacggag 24324689  T
Q  116 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtcag 211  Q
    ||||||| ||||||||||||||   | || | |||||||||||||||||| ||  ||||||||||||  ||||| || |||||||| ||||||||||| |    
T  24324688 agtttta-ttttgaggggtgtttttctttaggggtgagtagtgacgatgg-tg--gttggatatcgttcttacaatggtcgtttttcgtgaaggagtctg 24324593  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 285  Q
    ||||| | ||||| || |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  24324592 ttttaagtggtgacgtgtattttggtgagtgttgtcctcaagggtgt-ttttagagtgtttattttcgggtgtt 24324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 3478443 - 3478729
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||| | |  || ||||||  |  ||||| |||||||||||||||||||||||    
T  3478443 ttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactggga 3478542  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    |||| |||||||||| |||||| |||| ||||||||||||||| || || || |||||||||  ||||||||| |||| || ||||||  ||| |||| |    
T  3478543 gttt-aattttgaggagtgttctttgg-ggtgagtagtgacgacggttggtgatggatatcgcttttacagtg-tcgtattcgtgaagacgtctgtttga 3478639  T
Q  217 ggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 306  Q
    |  |||||  | | ||||||||  |||||| ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3478640 gttggtgacttgttttttggtggatgttgtgctctggattgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 3478729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 8745243 - 8745405
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||    
T  8745243 tttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactggg 8745342  T
Q  116 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatat 176  Q
    || |||||||||||||||||   ||| |||| ||||||||||||||| || || ||||||||||    
T  8745343 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacgaaggatggtgttggatat 8745405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 6716727 - 6716427
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 114  Q
    ||||||||||||||| | || ||||||||||||||||||||| |||||||| | | || ||  ||| || |||||||||||||||||||||||||| |||    
T  6716727 tttctttcggtggatcgaag-tcgagaggtggtggaagctgattgatcttttcggataagatttttccggatgtggctcagctttggtgttgaggaatgg 6716629  T
Q  115 gagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||| ||||||| |||  |||| ||| ||||||||| ||||||| ||||||||||  |||    
T  6716628 gagttt-aattttgtggggtgtttcgttgggggtgagtagtgacaatgggtggtgtgagataccgtttttacagtggtcgttttcgtgaaggagt--gtt 6716532  T
Q  214 ttaggcggtgatgtatattttggtgagtgttgtcctc-agag-gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    ||||| ||||   | || || |||  ||||| |||||  ||| || | ||||||||||||||||||| |||||||||  |||||||||| |||||| |||    
T  6716531 ttaggtggtgtcatgtacttgggttggtgttatcctcgtgagtgttttttttagggtgtttattttcaggtgttccggttatatacggcccctttaattt 6716432  T
Q  312 gtatt 316  Q
    |||||    
T  6716431 gtatt 6716427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 1320885 - 1321169
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||||||||| ||||| | ||| ||||||  || | || || ||||||  |||||||||| ||||||| || | ||| |||    
T  1320885 tttctttcggtggatcggaggtcgagagggggtggcaactgtatgatccctcggataagatcttttcagatgtggctcaactttggt-ttcatgacaggg 1320983  T
Q  116 agttttaattttgaggggtgttcgtt--ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaa-ggagtcagt 212  Q
    ||||| | ||||||||||| ||  ||  || ||||||||||||||||| ||| | || |||||||| ||||||||| | | ||| ||||| || ||| ||    
T  1320984 agttt-agttttgaggggtttttctttggggggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgt 1321082  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 301  Q
    |||||| |||||||| ||||||||||  || |||| ||| ||| || |||||||||||||||||||||| |||||||||||||||||||    
T  1321083 tttaggtggtgatgtgtattttggtggatggtgtcttca-aggggt-ttttagggtgtttattttcgggagttccgcctatatacggcg 1321169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 34390056 - 34390202
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| || |||   |||||||||||| ||||||||||| ||| |||||||  | |||||||    
T  34390056 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggag 34390155  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 165  Q
    |||| |||||||||||||||| |||| | |||||||||||||||||||    
T  34390156 tttt-attttgaggggtgttctttggggatgagtagtgacgatgggtg 34390202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 316
Target Start/End: Original strand, 33719185 - 33719355
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt-tgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgt 243  Q
    ||||||||||||||||| ||  ||||||||||| | ||||||| | ||||||| |||||||||||| |||||||||||||||   |||||||||| ||||    
T  33719185 ggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgt 33719284  T
Q  244 tgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||   |||| |||||||||||||| |||| | |||||||||||||| | ||||| || |||||||||    
T  33719285 tgtcctcatgagtgt-ttttagggtgtttactttc-gatgttccgcctatattcagcgccgtttgtttgtatt 33719355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 47325873 - 47325693
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||| ||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  47325873 tctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 47325774  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| ||||||  |||||||||||||| ||||||    
T  47325773 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgttttt 47325693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 35745813 - 35745601
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-at---gtggctcagctttggtgttgaggactg 113  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| || ||| | |||||||||||||| ||   |||||||||||| |||||||| | |||    
T  35745813 tctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctg 35745714  T
Q  114 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
       ||||| |||||||| ||||||| |||| |||||||||||||||||||||  | ||||| | |||||||  ||| | |||| ||| |||| ||| ||     
T  35745713 actgtttt-attttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtc 35745615  T
Q  214 ttaggcggtgatgt 227  Q
    ||||| ||||||||    
T  35745614 ttaggtggtgatgt 35745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 42533244 - 42532950
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||||  ||||||| |||||||||| | ||||| |||||||||| || |||||||||| || ||| ||||||||||| || ||||         
T  42533244 tttctttcggtggatcagaggtcgtgaggtggtggcaactgaacgatctttcagataagagcttttcggatatggatcagctttggt-ttcagga----- 42533151  T
Q  116 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
       |||| |||| || ||||   ||| |||| || |||||||||||||||||| | |||||| || | |||||| || | | ||| |||||   ||  ||    
T  42533150 --gtttattttttagaggtgtttttctttgggggcgagtagtgacgatgggtggtattggatttcatttttacaatggttgctttcgtgaataggtatgt 42533053  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| | ||| |||| |||| ||| |||||||| |||  || || ||||||||||||||||| | ||||||||||||||||||||||||||| | |||    
T  42533052 tttaggtgatgacgtatttttttgtgggtgttgtcatcaagggagt-ttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttg 42532954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 23983298 - 23983530
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    ||||||||||| || |||||| |||||||||||  || |||||||||||||   || |||||||||| || ||| ||||||||| || ||||||| | ||    
T  23983298 ttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgaggaccgaga 23983397  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
      ||| |||| ||| ||| ||| || | |||||||||||| |||||||  |  || ||||||| ||| ||||| | ||||| ||||| ||||| ||||||    
T  23983398 -atttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgt-ttttcagtggttgttttcgtgaatgagtctgtttta 23983495  T
Q  217 ggcggtgatgtatattttggtgagtgttgtcctca 251  Q
    || |||| ||| |||||||||| ||||||||||||    
T  23983496 ggtggtggtgtttattttggtgggtgttgtcctca 23983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 44353552 - 44353345
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  44353552 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 44353453  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 215  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| | |||| |   |||||| |||||    
T  44353452 agttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgtttt 44353357  T
Q  216 aggcggtgatgt 227  Q
    ||| ||||||||    
T  44353356 aggtggtgatgt 44353345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 31972054 - 31971942
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || ||||||||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | |||| |||||||    
T  31972054 aatgtggctcagcttgggtgttggggtctgggagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgataccgtgttt 31971957  T
Q  184 acagtgctcgttttt 198  Q
    |||||||| ||||||    
T  31971956 acagtgcttgttttt 31971942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 6492946 - 6492852
Alignment:
Q  191 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 285  Q
    |||||||| |||||||||| |||||||| ||||| ||  |||||||||  ||||||||||| |||||| ||||| ||||||||||||| ||||||    
T  6492946 tcgtttttatgaaggagtctgttttaggtggtgacgtgaattttggtggatgttgtcctcataggtgttttttatggtgtttattttcaggtgtt 6492852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 38306423 - 38306534
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||||||||| ||||||| || ||| |||||||| ||||||||| ||||| |||  ||||||||||||||||||||| || |||||||||||| |     
T  38306423 atgtggctcagcttgggtgttggggtctgtgagtttta-ttttgaggg-tgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctg 38306520  T
Q  185 cagtgctcgttttt 198  Q
    |||| || ||||||    
T  38306521 cagttcttgttttt 38306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 3867278 - 3867415
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||||||||| |||||||  |  ||| ||||||| ||||||||| ||||| |||| ||||||||||||||||||  | || |||||||||||||||    
T  3867278 atgtggctcagcttgggtgttggagtatggaagtttta-ttttgaggg-tgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgttta 3867375  T
Q  185 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 227  Q
    |||   | ||||||||||||||||  ||||| || ||||||||    
T  3867376 cag---ttgtttttgtgaaggagtttgttttgggtggtgatgt 3867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 16828906 - 16828791
Alignment:
Q  200 tgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacgg 299  Q
    |||||| | |||||||||  | |||||| ||||||||||  |||| || |||| ||| | || |||| ||||||||||||||||||||||||||||||||    
T  16828906 tgaaggggccagttttagatgatgatgtgtattttggtggttgttttcttcaggggtat-ttctaggatgtttattttcgggtgttccgcctatatacgg 16828808  T
Q  300 cgcctttagtttgtatt 316  Q
    ||| ||| |||||||||    
T  16828807 cgcattttgtttgtatt 16828791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 5860276 - 5860096
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||| | |||||||| |||||  |||  ||||| |||||| ||||| |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  5860276 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 5860177  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    |||||| ||||| | |||||||| |||  | |||||||||||||||||  ||| || ||| |||||| | |||||| ||||||    
T  5860176 agtttt-attttca-gggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgttaatagtgcttgttttt 5860096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 6585043 - 6585118
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 161  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagtttt-attttgaggggtgctatttggaggtgagtagtgacgatg 6585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 16954775 - 16954878
Alignment:
Q  211 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtt 310  Q
    |||||||| ||||| || |||||| |||  |||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||| ||||||  ||    
T  16954775 gttttaggtggtgacgtgtatttttgtggttgttttcttcaggggtgt-ttttagcgtgtttattttcggatgttccgcctatatacggtgccttttatt 16954873  T
Q  311 tgtat 315  Q
    |||||    
T  16954874 tgtat 16954878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 28534240 - 28534195
Alignment:
Q  271 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtatt 28534195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 36449171 - 36449224
Alignment:
Q  13 ggttttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 66  Q
    |||||||||||||||||| |||||| ||||||||||||||||  ||||||||||    
T  36449171 ggttttctttcggtggatcggaggttgagaggtggtggaagcataatgatcttt 36449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 33435203 - 33435337
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 116  Q
    ||||||||||||| |||||||| ||||| ||| |||||  |||||| ||| |  ||| ||| |||||| ||||||||||||| | |||||||| ||| ||    
T  33435203 tctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgaga 33435302  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtag 153  Q
    |||||  |||||| |||||||| |||| |||||||||    
T  33435303 gtttt-cttttga-gggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 13312180 - 13312227
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtatt 13312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 28534336 - 28534277
Alignment:
Q  199 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgt 258  Q
    ||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  28534336 gtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgt 28534277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 36674809 - 36674859
Alignment:
Q  265 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    |||||||||||||||| | ||||||||||||||| ||||||| ||||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacgacgccttttgtttgtat 36674859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 22567818 - 22567783
Alignment:
Q  281 gtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||||||||||||| |||||||||    
T  22567818 gtgttccgcctatatacggcgccttttgtttgtatt 22567783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 37795082 - 37795255
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||| | |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| ||  || |    
T  37795082 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgag 37795181  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 191  Q
    ||||||| ||||||||| ||||| |||  | | |||||| | |||||| | || |||||| |||||||||||||||    
T  37795182 agtttta-ttttgaggg-tgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgct 37795255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 9107481 - 9107547
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttga 322  Q
    ||||||||| |||||| ||||| | | ||||||||| ||||||||||||||  |||||||| |||||    
T  9107481 tgtcttttatggtgttcatttttgtgcgttccgcctttatacggcgcctttgatttgtattctttga 9107547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 26385903 - 26385858
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 306  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26385903 ttttatggtgtttatttt-gggtgttccgcctatatacggcgtcttt 26385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 44755679 - 44755729
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 66  Q
    |||||||||||  ||  |||||||| |||||||||||||||||||||||||    
T  44755679 tttctttcggtatatcagaggtcgataggtggtggaagctgaatgatcttt 44755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 8745469 - 8745521
Alignment:
Q  265 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 318  Q
    |||||||| |||||||||||||||||||||||||||| || | |||| ||||||    
T  8745469 gggtgttt-ttttcgggtgttccgcctatatacggcgtctcttgtttctatttt 8745521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 25438691 - 25438748
Alignment:
Q  260 ttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||| |||||||| |||||||||||||||||||||||||| || | | |||||||||    
T  25438691 ttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48058644 - 48058595
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 66  Q
    ||||||||||||  ||||||| | ||||||||||||||||| ||||||||    
T  48058644 ttctttcggtggtctggaggttgtgaggtggtggaagctgattgatcttt 48058595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 23983574 - 23983634
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| | |||||||||| || || ||||||||||||||  ||||||| ||||||||    
T  23983574 tgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtatt 23983634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41089735 - 41089691
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgat 62  Q
    ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  41089735 tctttcggtggatcggaggtcgcgaggttgtggaagctgcatgat 41089691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 36799 - 37097
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||| |||||| | |||||||||||||| |||||||||||||||||||| ||||| |||    
T  36799 tttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctcagctttggtgttcaggacgggg 36898  T
Q  116 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
     |  ||| |||| |||||||   ||| |||| |||||||||||||| ||| ||  ||||||| |||| ||||||||| | | ||| ||||||||||| ||    
T  36899 gg--ttattttttaggggtgtttttctttgggggtgagtagtgacggtggatg--gttggatgtcgtttttacagtggt-ggtttcgtgaaggagtctgt 36993  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| ||||| || ||||||| || |||| |||||||  ||||| ||||| ||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  36994 tttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttg 37093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 26045955 - 26045655
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||| |||| |||| ||||||||  |||  ||||||||||| ||||||||||| || |||||||||| | ||| |||| |||||||||| |||| || |    
T  26045955 tttctctcgggggatcggaggtcgttaggctgtggaagctgattgatctttcagatatgagcttttcggaggtgactcaactttggtgtttaggattgag 26045856  T
Q  116 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||| ||||||||||||||||   | |||| ||||||||||||||||||| | |||||||| |||| ||||| ||| || ||||  ||||| |||| ||    
T  26045855 agttt-aattttgaggggtgtttttctttgg-ggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgt 26045758  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| ||||| ||  ||||||||| ||||||||||||| || || |||||||||||||||||| || ||||||| ||||||||||||||||| |||||    
T  26045757 tttaggtggtgacgtgaattttggtgggtgttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttg 26045658  T
Q  313 tat 315  Q
    |||    
T  26045657 tat 26045655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 314
Target Start/End: Complemental strand, 13954178 - 13953941
Alignment:
Q  77 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggata 175  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||||| || |||| ||||||||||||||||| |||||    
T  13954178 cttttcggatgtggctcagctttggcgttgaggactgggagttt-aatttagaggggtgtttcgttgggggagagttgtgacgatgggtgatgtgggata 13954080  T
Q  176 tcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttatt 275  Q
    | || ||||||||  |||| ||  ||||  |||| |||||||| | |||  | |||||||||| | ||||||||||  ||| | ||||| ||||||||||    
T  13954079 ttgtttttacagtagtcgtcttcatgaaaaagtctgttttaggagatgacatgtattttggtgggagttgtcctcaagggtattttttaaggtgtttatt 13953980  T
Q  276 ttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  13953979 ttcaggtgttccgcctatatacggcgcctttagtttgta 13953941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 8297558 - 8297851
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||| || |||||||| ||||||||||||| |||||| |||||| | ||||||||||||| ||||||||| | ||||||||| | ||  |||    
T  8297558 tttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcggttttggtgttcatgatgggg 8297657  T
Q  116 agttttaattttgaggggtg---ttcgttggtg----gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagt 208  Q
    || |||||||||||||||||   ||| |||| |    ||||||||||||||| ||||  |||||| ||||| |||||| || || ||||  |||||||||    
T  8297658 ag-tttaattttgaggggtgtttttctttgggggtgagtgagtagtgacgataggtg--gttggaaatcgtttttacattggtctttttcttgaaggagt 8297754  T
Q  209 cagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 306  Q
      |||||||| |||||||| ||||||||||  |||| ||||||| ||||| ||||||||||| ||||||| |||||||||||||| |||  |||||||    
T  8297755 gtgttttaggtggtgatgtgtattttggtggatgttatcctcaggggtgt-ttttagggtgtgtattttcaggtgttccgcctatgtacaacgccttt 8297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 32 - 316
Target Start/End: Complemental strand, 26405520 - 26405239
Alignment:
Q  32 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgagg 131  Q
    |||| ||||||||||||||||||||| || |||||| | || |||||||||| | |||||||  |||||||||| |||||  ||||||| |||||||| |    
T  26405520 ggagatcgagaggtggtggaagctgattggtctttcggatatgagcttttcggaggtggctcgactttggtgttcaggacgaggagttt-aattttgatg 26405422  T
Q  132 ggtgttcgt--tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtat 229  Q
     |||||  |  | | |||||||||||||||||||||||  ||||||| || || |||||| || |||   ||||| |||| |||||||| ||||| || |    
T  26405421 agtgtttttctttgaggtgagtagtgacgatgggtgat--tggatatggttttaacagtg-tcatttccatgaagaagtctgttttaggtggtgacgtgt 26405325  T
Q  230 attttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||  |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  26405324 attttggtggttgttgtcctcaggggtgt-ttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtatt 26405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 14302421 - 14302133
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||               |||||||||||||||||| |||| ||||    
T  14302421 tttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatctttcggata---------------tggctcagctttggtgttcaggagtggg 14302337  T
Q  116 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||| ||||||||||||| ||   | |||| | |||||||||||||  |||| ||||||||||||| |||||| || ||||||| | |||||| || ||    
T  14302336 agttt-aattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgt 14302238  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| ||||| || |||||||||| |||||||| |||| ||||| ||||||| | |||||||| |||||||||  |||||||||||| || | ||||     
T  14302237 tttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgt-ttttaggatttttatttttgggtgttccttctatatacggcgtctcttgttta 14302139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 30097593 - 30097723
Alignment:
Q  186 agtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 285  Q
    |||||| ||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||| |||  | ||| ||||||||||||||||||||||||||    
T  30097593 agtgcttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgtt 30097692  T
Q  286 ccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||| ||||||||||||||    
T  30097693 ccgcctatatacggcgtctttagtttgtatt 30097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 316
Target Start/End: Original strand, 7682747 - 7682943
Alignment:
Q  120 ttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 218  Q
    |||||||||||||||||| | |||| | |||||||||||||||| || ||   ||||  || ||||| ||| ||||||||||||| |||||  |||||||    
T  7682747 ttaattttgaggggtgtttcattggggttgagtagtgacgatggatggtgcgagataaagtttttacggtggtcgtttttgtgaaagagtctattttagg 7682846  T
Q  219 cggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
     |||||||| |||||||||| ||||||| |||| | || | |||| ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||    
T  7682847 tggtgatgtgtattttggtgggtgttgttctcataagtatttttt-gggtgcttattttcggatgttccgcctatatacgacgcctttaatttgtatt 7682943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 7161935 - 7161795
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    ||||||||||||||  |||||| || |||||||||||| |||||| || ||||| |||| |||||||||||||| |||||| || |||| ||||||||||    
T  7161935 atgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgttta 7161838  T
Q  185 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 227  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||    
T  7161837 cagtgcttgtttttgtgaaggagtctgttttaggtagtgatgt 7161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 25992097 - 25992391
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||| ||||| |||||||| ||| || |||||||| ||||||||||| |  || ||||||| | | ||||||| ||||||||||| |||||| ||    
T  25992097 tttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatctttcggggagaagctttttgtaggtggctctgctttggtgttcaggactagg 25992196  T
Q  116 agttttaattttgaggggtgtt----cgttggtggtgag--tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtc 209  Q
    |||||   ||||||||||| ||    | |||| || |||  ||||| ||||||||| | ||||||||||| ||||||||| | | ||| ||||||| |||    
T  25992197 agtttg--ttttgaggggtattttttctttgggggcgagagtagtggcgatgggtggtattggatatcgtttttacagtggttgctttcgtgaaggggtc 25992294  T
Q  210 agttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagt 309  Q
     |||||||| ||        ||||||||| |||||||| |  | ||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||    
T  25992295 tgttttaggtgg--------attttggtgggtgttgtcattgg-ggtgt-ttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgt 25992384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 33258873 - 33258682
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| | ||||  |||||||| | | ||||||||||||||||||||| ||| || ||    
T  33258873 tttctttcggtggatcggaggtcgagagatagtggaagctgaatgatttctcagggaggagcttgttggatgtggctcagctttggtgttcaggtctagg 33258774  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 204  Q
    || |||  ||||| ||||||    ||| || | ||||||||||| |||||| || | ||||||||||| ||||||||| ||| ||| ||||||    
T  33258773 ag-tttgtttttgtggggtgttttttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaag 33258682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 7195227 - 7195112
Alignment:
Q  20 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 119  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||  | |||||||||| || |||||||||||||||||| || |||||| ||||||    
T  7195227 tttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttggataggagctttgcggatgtggctcagctttggtattcaggact-ggagtt 7195129  T
Q  120 ttaattttgaggggtgtt 137  Q
    || |||||||||| ||||    
T  7195128 tt-attttgagggttgtt 7195112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 272
Target Start/End: Complemental strand, 21398236 - 21398054
Alignment:
Q  90 gctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt 188  Q
    ||||| ||||||||||||||||| ||||||| | ||| ||||| |||| |||||| |||||||| ||| |||||||| ||  ||||||||| ||||||      
T  21398236 gctcaactttggtgttgaggactaggagttt-attttagagggttgtttcgttgggggtgagtactgatgatgggtggtgcgggatatcgtttttacaaa 21398138  T
Q  189 gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt 272  Q
    | | ||||| ||||||| ||| |||||||  ||||| || |||||| || |||||||||||||| ||||| ||||| |||||||    
T  21398137 ggttgttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgttttttaaggtgttt 21398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 7195114 - 7195014
Alignment:
Q  193 gtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgccta 292  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||| ||| ||||| |||||||||||||||||| || |||||||| ||    
T  7195114 gtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtgt-ttttagggtgtttatttttggatgttccgcata 7195016  T
Q  293 ta 294  Q
    ||    
T  7195015 ta 7195014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 24072017 - 24071952
Alignment:
Q  251 agaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24072017 agaggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcccttagtttgtatt 24071952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 10174923 - 10175069
Alignment:
Q  168 gttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttaggg 267  Q
    |||||||||||| ||||| ||| ||||||||  ||||||||| |||||||| ||| | || || ||||||| ||||||||||| ||||||| |||||||     
T  10174923 gttggatatcgtttttaccgtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtgt-ttttagga 10175021  T
Q  268 tgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||| |||| ||||||  |||||||||||  |||||| |||||||||    
T  10175022 tgttta-tttcaggtgttttgcctatatacgatgccttttgtttgtatt 10175069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 294
Target Start/End: Complemental strand, 33110050 - 33109913
Alignment:
Q  154 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 253  Q
    |||||||||||| | ||||||||||| ||||||||| ||||||| ||||||| ||  |||||||| | ||| || |||||||||| |||||||| | ||     
T  33110050 tgacgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtcat-ag- 33109953  T
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctata 294  Q
    ||||| |||||  ||||||||||||||||||| || |||||    
T  33109952 ggtgt-ttttaaagtgtttattttcgggtgtttcggctata 33109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 7392028 - 7391937
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttg 106  Q
    ||||||||||||||| ||||||||||||||||| ||||| || ||||||| |  | ||||||||||||| ||||||||| ||||| ||||||    
T  7392028 tttctttcggtggatcggaggtcgagaggtggttgaagcggattgatcttattggataggagcttttcggatgtggctctgctttcgtgttg 7391937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 18593404 - 18593516
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||| ||| ||||||| || ||||||||||||  ||||  || ||||| |||  ||||||||||||||||||| | || |||||| |||||||    
T  18593404 aatgtggctcaacttgggtgttggggtctgggagtttta--tttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 18593501  T
Q  184 acagtgctcgttttt 198  Q
    |||||||| ||||||    
T  18593502 acagtgcttgttttt 18593516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 21402828 - 21402749
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctca 94  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| | |||||||||||| || ||||||||    
T  21402828 tttctttcggtggattggaggttgagaggtggtggaagttgattgatcttttcgggtaggagcttttcaaacgtggctca 21402749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 297
Target Start/End: Complemental strand, 7391917 - 7391709
Alignment:
Q  86 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||| ||||| |||||||||| |||||| ||  ||||||||||||||| | |||| |||||||||||||||  ||   ||  |||| |||| ||||    
T  7391917 tgtggctctgctttcgtgttgaggaatgggagatt--attttgaggggtgtttctttgggggtgagtagtgacgacaggctgtgcgggatttcgttttta 7391820  T
Q  185 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgt 284  Q
    ||||| || |||  ||| |||| ||| ||||||| |||||  | ||||||| || ||||||||||||  ||||| ||||||| ||| || |||| ||| |    
T  7391819 cagtggtcttttccgtggaggaatcaattttaggtggtgacatgtattttgatg-gtgttgtcctcatgggtgt-ttttaggttgtgtactttcaggttt 7391722  T
Q  285 tccgcctatatac 297  Q
    |||||||||||||    
T  7391721 tccgcctatatac 7391709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 31742504 - 31742552
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgta 31742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 29087575 - 29087752
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||||||| |||||  ||| ||||  |||||| ||  |  ||| ||| |||| |||||||||| ||| | ||||| || |||||||    
T  29087575 tctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcgtatgtggctcaacttagatgttggggtctgggag 29087674  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
     |||| ||||||||| |  || || | ||||||||||||||||||| | || || ||| ||||||||||||||| ||||||    
T  29087675 cttta-ttttgagggtt--tctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgttttt 29087752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 31721950 - 31722058
Alignment:
Q  203 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 302  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||  | ||  |||| ||||    |||||| ||||||||||||||| |||||||||||||    
T  31721950 aggagtcagttttagg--gtgatgtttattttggtgggtgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgc 31722047  T
Q  303 ctttagtttgta 314  Q
    | ||||||||||    
T  31722048 c-ttagtttgta 31722058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 8731278 - 8731328
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  8731278 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 34378259 - 34378359
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  34378259 aatgtggctcagcttgggtgttggggtttgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 34378356  T
Q  184 aca 186  Q
    |||    
T  34378357 aca 34378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 5656931 - 5656878
Alignment:
Q  170 tggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 223  Q
    ||||||||||||||||||| ||  ||||| ||||||||||||||||||| ||||    
T  5656931 tggatatcgtgtttacagttcttctttttatgaaggagtcagttttaggtggtg 5656878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 27713421 - 27713462
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  27713421 ttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 33258636 - 33258579
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattt 317  Q
    ||||| |||||||||||||||||||| | | ||||||||||||||||  |||||||||    
T  33258636 ttttatggtgtttattttcgggtgtttcacatatatacggcgccttttatttgtattt 33258579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 698522 - 698611
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggata 175  Q
    ||||||||||||||| ||||||| || ||| ||||||||  ||||  |||||||| |||  |||||||||||||||| || |||| ||||||    
T  698522 aatgtggctcagcttgggtgttggggtctgagagtttta--tttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggata 698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 18313504 - 18313425
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 227  Q
    ||||||||||||||||| ||| || |||||||||||||||| ||| | |||||| |   |||||| |||||||| ||||||||    
T  18313504 ggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgttttttt---ggagtctgttttaggtggtgatgt 18313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 37108103 - 37108170
Alignment:
Q  229 tattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 297  Q
    |||||||||| ||||| ||||||  ||||| ||||||||||||||||||  | ||||||||||||||||    
T  37108103 tattttggtgggtgttatcctcatgggtgt-ttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 25657871 - 25657813
Alignment:
Q  255 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    |||| ||||| |||||||||||| || ||||| ||||||||||||||||| |||||||||    
T  25657871 gtgttttttatggtgtttattttagg-tgttctgcctatatacggcgcctgtagtttgta 25657813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 39024432 - 39024385
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatct 64  Q
    |||||||||||||||||| || ||||||||||||||  ||||||||||    
T  39024432 ttctttcggtggattggaagttgagaggtggtggaacttgaatgatct 39024385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 5187219 - 5187332
Alignment:
Q  202 aaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 301  Q
    |||||||| | |||||| |||||||| || || ||||  |||| ||||||   ||| |||||| |||||||||||||||||| | |  |||||| |||||    
T  5187219 aaggagtctggtttaggtggtgatgtgtacttgggtggatgttatcctcatgagtg-cttttatggtgtttattttcgggtgcttcatctatatgcggcg 5187317  T
Q  302 cctttagtttgtatt 316  Q
    ||||| |||||||||    
T  5187318 ccttttgtttgtatt 5187332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 23426646 - 23426680
Alignment:
Q  272 tattttcgggtgttccgcctatatacggcgccttt 306  Q
    ||||||||||||||||||||||||||||| |||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttt 23426680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 6159827 - 6159866
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgccttt 306  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  6159827 ggtgtttatttt-gggtgttccgcctatatacagcgccttt 6159866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 58217 - 58518
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||| || |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||  |||||| |    
T  58217 tttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgag 58316  T
Q  116 agttttaattttgagg---ggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    || |||||||||||||   | ||||| ||||  |||||||||||||| ||||  |||||||||||   |||||| || ||||||| ||||||||||| ||    
T  58317 ag-tttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgt 58415  T
Q  213 tttaggcggtgatgtatattttgg-tgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    ||| || |||||||| || ||||| ||| || ||| ||||  ||||| ||||||||| |||||||| ||||||||  |||||||||||||||||| ||||    
T  58416 ttttggtggtgatgtgtactttggctga-tggtgttctcatgggtgt-ttttagggtatttatttttgggtgttctacctatatacggcgccttttgttt 58513  T
Q  312 gtatt 316  Q
     ||||    
T  58514 ctatt 58518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 316
Target Start/End: Complemental strand, 10248497 - 10248256
Alignment:
Q  77 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtgg-tgagtagtgacgatgggtgatgttggat 174  Q
    ||||||| |||||||||| |||||||||||||||||  |||||| |||||||| ||||||| |||||| || ||||||||||||||||||| ||| ||||    
T  10248497 cttttcggatgtggctcaactttggtgttgaggacttagagttt-aattttgacgggtgtttcgttggggggtgagtagtgacgatgggtgttgtgggat 10248399  T
Q  175 atcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtg-ttta 273  Q
     |||| ||||||||| ||||||| ||||||||||  |||||||| ||||| || |||||||| | ||||||||||||  ||||| ||||| |||| |||     
T  10248398 gtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtcctcaagggtgttttttaaggtgttttt 10248299  T
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||| |||||||||||||||||||| ||||||||| |||||||    
T  10248298 ttttagggtgttccgcctatatacgacgcctttaggttgtatt 10248256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 12198058 - 12197757
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactg 113  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||    
T  12198058 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctg 12197959  T
Q  114 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
    ||||||| ||||||        ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| |||    
T  12197958 ggagttt-aatttt--------ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgtt 12197868  T
Q  214 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 313  Q
     |||| ||||| || |||||| ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  12197867 gtaggtggtgacgtgtatttttgtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgt 12197769  T
Q  314 attttttgattc 325  Q
    ||| | ||||||    
T  12197768 attctctgattc 12197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 12442486 - 12442185
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactg 113  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||    
T  12442486 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctg 12442387  T
Q  114 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
    ||||||| ||||||        ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| |||    
T  12442386 ggagttt-aatttt--------ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgtt 12442296  T
Q  214 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 313  Q
     |||| ||||| || |||||| ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  12442295 gtaggtggtgacgtgtatttttgtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgt 12442197  T
Q  314 attttttgattc 325  Q
    ||| | ||||||    
T  12442196 attctctgattc 12442185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 17656993 - 17656873
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||  | |||||||| |||||||||| | || ||||    
T  17656993 tttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtgttcatgattggg 17656894  T
Q  116 agttttaattttgaggggtgtt 137  Q
    || |||||||||||||||||||    
T  17656893 ag-tttaattttgaggggtgtt 17656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 311
Target Start/End: Complemental strand, 17656603 - 17656432
Alignment:
Q  140 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgt-gaaggagtcagttttaggcggtgatgtatattttggtg 238  Q
    |||| ||||||||||||| ||| | | ||||||||||||| ||| ||||| |||||||| | ||||||||| |||||||  ||||| ||  |||||||||    
T  17656603 ttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttggtg 17656504  T
Q  239 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
     ||||||||||||  ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  17656503 ggtgttgtcctcaagggtgt-ttttagggtgttaattttcgggtgttccgtctatatacgacgccttttgttt 17656432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 38577777 - 38577606
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg-a 116  Q
    |||||||||||||  ||||||||||| | |||||||||| ||| || ||| | | |||||||||||||| |||| || ||| |||||||| | ||||| |    
T  38577777 tctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctgggga 38577678  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    |||||| ||||| || |||||| |||| | |||||||||||||||| ||||  ||||||  ||||||||||||    
T  38577677 gtttta-ttttgtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtg 38577606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 8862481 - 8862314
Alignment:
Q  149 agtagtgacgatgggtgatgtt-ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtc 247  Q
    ||||||||||| | ||| |||| |||||| || |||||| || | ||| | ||| | |||||||||||||| ||||| || |||||| ||| ||||||||    
T  8862481 agtagtgacgacgtgtggtgtttggatattgtttttacaatggttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtc 8862382  T
Q  248 ctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||  | ||||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||| |||||||    
T  8862381 cttcggggtgttttttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 43312558 - 43312375
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    ||||| |||||||||| ||||||| ||| ||||||| || |||||| | | |||||||| || ||||||||||||||  || ||| ||||||||| ||||    
T  43312558 atgtgactcagctttgatgttgagaactaggagttt-aactttgagagtt-ttcgttgggggcgagtagtgacgatgtatggtgtgggatatcgttttta 43312461  T
Q  185 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtt 271  Q
    ||||| ||||||||||| ||||||| | |||||| |||||  | ||||||| || |||||||  |||| ||||| ||||||| ||||    
T  43312460 cagtggtcgtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt-ttcagcggtgttttttaggatgtt 43312375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 20138519 - 20138726
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  20138519 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 20138618  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 215  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| | |||| |   |||||| |||||    
T  20138619 agttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgtttt 20138714  T
Q  216 aggcggtgatgt 227  Q
    ||| ||||||||    
T  20138715 aggtggtgatgt 20138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 31207348 - 31207177
Alignment:
Q  20 tttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||| |||||||| |||||  |||  |||||||||| | ||| | |||| ||| |||||| ||||||||||||| |||||||  |  ||||||    
T  31207348 tttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggag 31207249  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 191  Q
    ||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| ||||||  ||||||||||||||    
T  31207248 tttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgct 31207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 35816230 - 35816066
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||| ||||||| |||||| ||||| | |||||||||| ||| || ||| | || ||| |||||||||||||||||| || | |||||| | | | |||    
T  35816230 tcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagag 35816131  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 186  Q
    ||    ||||||||||||||| |||| |||||||||||| |||||||| |  ||||||  |||||||||    
T  35816130 tt----ttttgaggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttaca 35816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 41791070 - 41790961
Alignment:
Q  205 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttt-tagggtgtttattttcgggtgttccgcctatatacggcgcc 303  Q
    |||||||||||||| |||||||| |||||||||| | |||||||| |   |||||||| | |||| |||||||| |||||||||||||||||||| |  |    
T  41791070 gagtcagttttagggggtgatgtttattttggtgggggttgtccttatgagtgtctttattgggt-tttatttttgggtgttccgcctatatacgacatc 41790972  T
Q  304 tttagtttgta 314  Q
    |||||||||||    
T  41790971 tttagtttgta 41790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 41893322 - 41893210
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| |||||||||| ||||||||| || |||| |||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  41893322 aatgtggctcagcttgggtgttgaggtctgggagttcta-ttttcaggg-tgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttt 41893225  T
Q  184 acagtgctcgttttt 198  Q
    ||||| || ||||||    
T  41893224 acagttcttgttttt 41893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 37986846 - 37986666
Alignment:
Q  18 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||| | |||||||| |||| | |||  |||||  ||||| ||| | |||| ||| |||| ||||||||||||||| ||||||  || |||||    
T  37986846 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctggg 37986747  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    |||||||  ||||  |||||||| |||  |||||||| |||||||||||| || | |||| |||||||||| |||| ||||||    
T  37986746 agtttta--tttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttacaatgcttgttttt 37986666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 15821313 - 15821224
Alignment:
Q  71 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 161  Q
    |||||||||||||||||||||||||||  | |||||| | ||||||||||| ||||||||| |||||| || |  |||||||||| |||||    
T  15821313 taggagcttttcgaatgtggctcagctcggatgttgaagtctgggagtttt-attttgaggagtgttcttttggagtgagtagtggcgatg 15821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 30235857 - 30235809
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  30235857 ggtgtttgttttcggatgttccgcctatatacggagcctttagtttgta 30235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 9519627 - 9519764
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 149  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  ||| |||||||| ||||||||| ||||| |||  |||||    
T  9519627 agctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagtttta-ttttgaggg-tgttctttgtgggtga 9519724  T
Q  150 gtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    |||||||||||||| | || |||||| |||||||||||||    
T  9519725 gtagtgacgatgggcggtggtggataccgtgtttacagtg 9519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 17720444 - 17720398
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  17720444 gtttatttt-gggtgttctgcctatatacggcgcctttagtttgtatt 17720398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 8862563 - 8862505
Alignment:
Q  45 tggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 103  Q
    ||||||||||||||||||||||| | || || ||||||  |||||||||||||||||||    
T  8862563 tggtggaagctgaatgatctttcggatatgaacttttcagatgtggctcagctttggtg 8862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 30235935 - 30235889
Alignment:
Q  203 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 249  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  30235935 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 30235889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 24995348 - 24995202
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 149  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  || ||||||||| ||||||||| ||||| |||   ||||    
T  24995348 agctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagtttta-ttttgaggg-tgttctttgtgcgtga 24995251  T
Q  150 gtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    |||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  24995250 gtagtgacgatgggcggtggtggataccgtgtttacaatgcttgttttt 24995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 9831741 - 9831694
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||||    
T  9831741 gtttattttcgggtggtcggcctatatacgacgtctttagtttgtatt 9831694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 10248544 - 10248494
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 66  Q
    ||||||| ||||||| ||||| || ||||||||||||||||| ||||||||    
T  10248544 tttcttttggtggatcggaggccgcgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 22325931 - 22325826
Alignment:
Q  171 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 270  Q
    ||||||||| |||||| || |||||||||| |||||||| ||||||   |||||  |||||||||||| |||| ||| | |  ||||| ||||||| |||    
T  22325931 ggatatcgtttttacaatggtcgtttttgttaaggagtctgttttatatggtgacctatattttggtgggtgtcgtcattatgggtgt-ttttaggatgt 22325833  T
Q  271 ttatttt 277  Q
    |||||||    
T  22325832 ttatttt 22325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 34388925 - 34388822
Alignment:
Q  85 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 184  Q
    |||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  |||||||||||||||| || | || |||||| ||||||||    
T  34388925 atgtggctcagcttgggtgttggggtatgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgataggcggtggtggata-cgtgttta 34388829  T
Q  185 cagtgct 191  Q
    || ||||    
T  34388828 cattgct 34388822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 5215044 - 5215000
Alignment:
Q  269 gtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  5215044 gtttgttttcgggtgtttcgcctatatacggcgcc-ttagtttgta 5215000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 12898195 - 12898120
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 161  Q
    ||||||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||||||||||||||||    
T  12898195 aatgtggctcagcttgggtgttggggtcttagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 16457336 - 16457283
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  16457336 ggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 16457283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 17720696 - 17720647
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 66  Q
    ||||||||||||| | ||||| ||||||||||||||| ||| ||||||||    
T  17720696 ttctttcggtggacttgaggttgagaggtggtggaagttgattgatcttt 17720647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 36631039 - 36631123
Alignment:
Q  140 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 227  Q
    |||| |||||||||| |||||||| | || |||||| ||||||||||||| | |||||| |   |||||| |||||||| ||||||||    
T  36631039 ttgggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt---ggagtctgttttaggtggtgatgt 36631123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 5221553 - 5221506
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 304  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||||||    
T  5221553 tgtcttttttggtgtttctttt-gggtgttccgcctatatacggcgcct 5221506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 10552609 - 10552645
Alignment:
Q  266 ggtgtttattttcgggtgttccgcctatatacggcgc 302  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10552609 ggtgtttgttttcggatgttccgcctatatacggcgc 10552645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 16833012 - 16832711
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||| |||| | ||| ||| ||||||| | |||||||||||||||||  | || |||||||||| |||||||||| |||||||||| | ||||| |    
T  16833012 tttctttcagtggttcggaagtcaagaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctcaactttggtgttcaagactgtg 16832913  T
Q  116 agttttaattttgaggggtgtt----cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtca 210  Q
    ||||| ||||||||||||||||    | |||| ||||||||||||||| ||||| ||||||||||| | ||||||| | |||||||| ||| |||| |      
T  16832912 agttt-aattttgaggggtgttttttctttgg-ggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgtttttcgtgcaggaatat 16832815  T
Q  211 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtt 310  Q
    |||||||| ||||| || ||||| |||| |||||||||||||  | || ||||||||||||||||||  |||||||||||||||| | |||||||| |||    
T  16832814 gttttaggtggtgacgtttattt-ggtgggtgttgtcctcaggagagt-ttttagggtgtttattttttggtgttccgcctatatgcagcgccttttgtt 16832717  T
Q  311 tgtatt 316  Q
    ||||||    
T  16832716 tgtatt 16832711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 41117958 - 41117677
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||   |||||||||| || | ||||||||| ||||||||| | ||  |||    
T  41117958 tttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcggg 41117859  T
Q  116 agttttaattttgaggggtgttcgttg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||||| || |||||||||||  |     | |||||||| ||||||||||||  |||||||||||| ||||||  | | ||||| ||| | ||||| ||    
T  41117858 agtttta-ttctgaggggtgtttttctaaaggggtgagtaatgacgatgggtg--gttggatatcgtttttacaacggttgttttcgtgcatgagtctgt 41117762  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 298  Q
    | |||| |||||| | |||||||||| ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||    
T  41117761 tctaggtggtgatatgtattttggtgggtgttgtcctcat-ggtgttatttagggtgtttattttcgggtgttccgcctatatacg 41117677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 48098423 - 48098641
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||| ||||| | |||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||    
T  48098423 tttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctcaactttggtgtttaagactggg 48098522  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    || |||| |||| |||||||    ||| |||| ||||||||||||||| ||||  || |||||||||| ||||||||| ||||||||||||| ||||  |    
T  48098523 ag-tttattttttaggggtgtattttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtgaaagagt--g 48098619  T
Q  212 ttttaggcggtgatgtatattt 233  Q
    ||||||| ||||| || |||||    
T  48098620 ttttaggtggtgacgtgtattt 48098641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 19311346 - 19311069
Alignment:
Q  35 ggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaat--------tt 126  Q
    |||||||||||||||||||||| |||||||||  | || |||||||| |||||||| || |||||||||||||||||| |||||| | |         ||    
T  19311346 ggtcgagaggtggtggaagctgtatgatcttttggttaagagctttttgaatgtggttcggctttggtgttgaggactaggagttcttacggtgctcgtt 19311247  T
Q  127 tgagggg-tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgat 225  Q
    ||||||| | ||| |||| |||||| ||||||| |||  ||||||||||||||| ||||||||||||||||| |||||||| || ||||  || |||||     
T  19311246 tgagggggtattctttgggggtgagcagtgacggtggaggatgttggatatcgtttttacagtgctcgttttcgtgaaggaatctgtttatggtggtgac 19311147  T
Q  226 gtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 304  Q
    || |||||||||| ||||| ||| ||| || || |||||||||||||| |||||| |||||||||||| ||||| ||||    
T  19311146 gtgtattttggtgggtgttatccccaggggagt-ttttagggtgtttaatttcggatgttccgcctatttacggtgcct 19311069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 38637224 - 38636927
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |  | | || ||| |||||||||| | || ||||    
T  38637224 tttcttttggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataagagctttgccgaggcggttcaactttggtgttcaagattggg 38637125  T
Q  116 agttttaattttgaggggtgttcgtt---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    ||||||| | |  |||||||||  |    || |||||||||||||||||||||  |||||||||| | ||||||| | | ||||| ||||||||||  ||    
T  38637124 agttttagtata-aggggtgtttttctaagggggtgagtagtgacgatgggtg--gttggatatcatttttacagcggttgttttcgtgaaggagtttgt 38637028  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    |||||| |||||  | |||||| ||| ||||||||||| | ||| |  |||| ||||||||||||| ||||||||||||| ||||||||||| | |||||    
T  38637027 tttaggtggtgacatgtattttcgtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta-atacggcgcctcttgtttg 38636929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 19815210 - 19814910
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||  |||||||||||| ||||||||||| ||||||||||| | ||||| ||||||  |||||||| | |||||||||||||||||| ||    
T  19815210 ttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactgaga 19815111  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    | |||||| |||||  |||||| |||| ||||||||||||| | || || | ||||||||| | ||||| ||| || |||| ||||||  ||| |||| |    
T  19815110 g-tttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgtttga 19815012  T
Q  217 gg---cggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcc-tttagtttg 312  Q
    ||    ||||| || | |||||||| ||||||||||   | |||||||||| | |||||||||| |||||||| || |||||||  |||| |||||||||    
T  19815011 ggtactggtgacgtgttttttggtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtgttctgcttatatacaacgccttttagtttg 19814912  T
Q  313 ta 314  Q
    ||    
T  19814911 ta 19814910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 31050648 - 31050478
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    |||||| |||||| |||||||||||||| |||||||||| ||| || ||| | |||||||||||||| ||||||| ||||| |||||||| | ||||  |    
T  31050648 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctg 31050549  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    |||| |||||||||||||||| |||| |||||||||||||||||| ||||| ||||| | ||||||||||||    
T  31050548 tttt-attttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtg 31050478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 25753262 - 25753500
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||||||||||| |  || ||||||| | |||||| ||| ||||| |||| |||||||      
T  25753262 tttctttcggtggatcggaggtcgataggcagtggaagctgaatgatctttcggagagaagctttttggatgtggttcaactttgatgttcaggactgaa 25753361  T
Q  116 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 212  Q
    || |||||||||||||||||   ||| |||| |||||||||||||||||  |||||||||||| ||  |||||||||  | |||| ||||||||||  ||    
T  25753362 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacgatgaatgatgttggataccgattttacagtggcccttttcgtgaaggagtttgt 25753460  T
Q  213 tttaggcggtgatgtatattttggtgagtgttgtcctcag 252  Q
    |||||| | |||  | |||||||||| |||||||||||||    
T  25753461 tttaggtgatgacttgtattttggtgggtgttgtcctcag 25753500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 35341325 - 35341141
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||||||| |  ||||||    
T  35341325 tctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgttgaagtttgggag 35341227  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaagg 205  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||||||| |   |||||  |||||||||||| | |||||||| ||||    
T  35341226 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtttttgttaagg 35341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 19673191 - 19673377
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||||||| |  |||||| || ||||||||||| |||||| |||  | || || ||||||| |||||||| | |||||||||||||||||| ||    
T  19673191 ttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactgaga 19673290  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 204  Q
    | ||||||||||||| |||||| |||| ||||||||||||||| || || |||||||||| |  ||||||||| || |||| ||||||    
T  19673291 g-tttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaag 19673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 315
Target Start/End: Original strand, 49747657 - 49747917
Alignment:
Q  55 tgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--ttcgttggtggtgagta 152  Q
    ||||||||||||||  || |||||||||| |  ||||| |||||||||||  |||| ||| ||||| | ||| ||| |||   ||| || | ||||||||    
T  49747657 tgaatgatctttcatatatgagcttttcggagatggcttagctttggtgtcaaggattggaagttt-attttagagaggttgtttctttaggggtgagta 49747755  T
Q  153 gtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcag 252  Q
    ||||| ||||| | |||||||| |||| |||||| || ||||||| ||||| ||||| |||||||| |||||  |  ||||||||| |||||||||||||    
T  49747756 gtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtcctcag 49747854  T
Q  253 aggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 315  Q
    |||||| ||||| |||||||||||| || |||||||| ||||||||  | |||| ||||||||    
T  49747855 aggtgttttttatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtat 49747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 49528162 - 49528282
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||| | ||| |||||| || |||||| |||||||||||||| | ||||| |    
T  49528162 tttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtgttcaagactgag 49528261  T
Q  116 agttttaattttgaggggtgtt 137  Q
    |||||| |||||||||||||||    
T  49528262 agtttt-attttgaggggtgtt 49528282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 2825877 - 2826020
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| ||||||| |||||| |||||||||| ||| || ||| | ||||||||||||||| |||| |||| || |||||||| |  ||||||    
T  2825877 tctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggag 2825976  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 163  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||||    
T  2825977 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 22811151 - 22810864
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||   ||||   | |||||| ||| || ||||||||||||||||||||| ||||| | |    
T  22811151 tttctctcgatggattggaggttgagaggtggtggaagttgaaatgtcttctggttaggagttttgcggatgtggctcagctttggtgttcaggacggag 22811052  T
Q  116 agttttaattttgaggggtgtt--cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
     ||||||  ||| || ||| ||  | |||| |||||||||||||||||| ||  || ||||||||| ||||||||| ||| ||| |||||| |||| |||    
T  22811051 ggttttatcttttagaggttttttctttgggggtgagtagtgacgatggatg--gtaggatatcgtttttacagtggtcggtttcgtgaagcagtctgtt 22810954  T
Q  214 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 313  Q
    ||||| ||||| || |||||||||| |||  ||||||            ||||||||||| |||||| | |||||| |||||||||||||||| ||||||    
T  22810953 ttaggaggtgacgtgtattttggtgggtgaggtcctc------------tagggtgtttactttcggatattccgcttatatacggcgccttt-gtttgt 22810867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 39420896 - 39420745
Alignment:
Q  146 gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttg 245  Q
    |||||||||||||| ||||| ||||||||||||| | ||| ||| | ||| | ||| |||||||||||||||  ||||| || |||||||||| |||||     
T  39420896 gtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggtg-gtgtta 39420798  T
Q  246 tcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 298  Q
    | ||||   |||| ||||| |||||| ||||||||||||||||||||||||||    
T  39420797 tgctcatgagtgttttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 39421000 - 39420914
Alignment:
Q  20 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 106  Q
    ||||||||||| |||| |||||||||||||||| |||| |||| |||||| |||||||||||| ||||||||| ||||| |||||||    
T  39421000 tttcggtggatcggagatcgagaggtggtggaaactgattgatatttcagataggagcttttcaaatgtggcttagcttcggtgttg 39420914  T

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Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 53823412 - 53823314
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagc-taggagcttttcgaatgtggctcagctttggtgttgaggactg 113  Q
    ||||||||||| ||| | |||||||||||||||||||| ||| ||||||||  |  ||||||||||| | |||||||||||||||||||||||||||||    
T  53823412 tttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatctttttggataggagcttttaggatgtggctcagctttggtgttgaggactg 53823314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 2061729 - 2061677
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttca 68  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2061729 tttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatctttca 2061677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 28967209 - 28967265
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  28967209 ttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtatt 28967265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 8255120 - 8255299
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8255120 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8255219  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 197  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  |||||||||||||| |||||    
T  8255220 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 8268538 - 8268717
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8268538 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8268637  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 197  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  |||||||||||||| |||||    
T  8268638 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 48098645 - 48098698
Alignment:
Q  265 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 318  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatactgcgtcttttgtttgtatttt 48098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 53823281 - 53823151
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 244  Q
    ||||||||||| || |||||| ||| ||||||||| ||||  |||  | |||||||||||||||| |||   || | ||| || |||||||||| |||||    
T  53823281 ggtgagtagtgtcggtgggtggtgtgggatatcgtttttatggtggacatttttgtgaaggagtctgtt---ggtgatgacgtgtattttggtgggtgtt 53823185  T
Q  245 gtcctcagaggtgtcttttagggtgtttattttc 278  Q
     ||||||| ||| | |||||||||||||||||||    
T  53823184 atcctcaggggtattttttagggtgtttattttc 53823151  T

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Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 46487621 - 46487670
Alignment:
Q  267 gtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  46487621 gtgtttattttcggatgttccgcctatatacgatgcctttagtttgtatt 46487670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 35336914 - 35336964
Alignment:
Q  270 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatttttt 320  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| |||||    
T  35336914 tttattttcggatgttccgtctatatacggcgccttttgtttgtacttttt 35336964  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 43373910 - 43373864
Alignment:
Q  203 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 249  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  43373910 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 43373864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 42719494 - 42719546
Alignment:
Q  264 agggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||||||| ||| |||||| ||||||||||| |||| |||||||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtatt 42719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 8706061 - 8705952
Alignment:
Q  87 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 186  Q
    |||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||| ||||||||||||||   || ||||||  |||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagtttta-ttttgaggg-tgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttaca 8705964  T
Q  187 gtgctcgttttt 198  Q
    ||||| ||||||    
T  8705963 gtgcttgttttt 8705952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 25754199 - 25754265
Alignment:
Q  249 tcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||| ||||| ||||||||||||| | ||||||| ||||||||||||| |||  ||||||||    
T  25754199 tcagaggtgt-ttttatggtgtttattttcagatgttccgtctatatacggcgctttttatttgtatt 25754265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 38930122 - 38930177
Alignment:
Q  260 ttttagggtgtttatttt-cgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||| |||||||||||| |||||||||| |||||||||||| ||||| |||||||    
T  38930122 ttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 35948044 - 35947998
Alignment:
Q  270 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||||||||||||||||||| |||||| |||| |||| |||||||||    
T  35948044 tttattttcgggtgttccgcttatatatggcgtcttttgtttgtatt 35947998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 2061627 - 2061542
Alignment:
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 297  Q
    ||||||| |||||  | ||||||| || |||||| |||||| ||| | |||||| ||||||||| || | ||||||||||||||||    
T  2061627 ttttaggtggtgacttgtattttgatgggtgttgccctcaggggtattttttagtgtgtttattatcagatgttccgcctatatac 2061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 20464796 - 20464869
Alignment:
Q  131 gggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 204  Q
    |||||||  |||| ||||||||||||||||||| | || |||||| ||||||||||| | | |||||| |||||    
T  20464796 gggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaag 20464869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 19432386 - 19432426
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  19432386 ttttcggatgttccgtctatatacggcgccttttgtttgta 19432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 30964624 - 30964702
Alignment:
Q  110 actgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgc 190  Q
    ||||||||||||| ||||||||| ||||| |||  |||||||||||| |||||| | || || ||||||| ||||||||||    
T  30964624 actgggagtttta-ttttgaggg-tgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgc 30964702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 43373824 - 43373784
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  43373824 ttttcgggtgtttcgcctatatacaacgcctttagtttgta 43373784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 14879526 - 14879708
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| | ||||||||| | | |||||    
T  14879526 tttctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaagtctggg 14879625  T
Q  116 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 196  Q
    ||||| ||||||||||||||||   | || | ||||| ||||||||||| ||| ||||||||||||| ||| ||||| ||||||    
T  14879626 agttt-aattttgaggggtgtttttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 4170855 - 4171134
Alignment:
Q  36 gtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg 135  Q
    |||| ||||||||||||||| ||||||||||  | ||||||||||    ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  4170855 gtcgggaggtggtggaagcttaatgatctttggg-taggagctttggagatgtggctcagctttggtgttaaggactgagagttttacttt-gaggggtg 4170952  T
Q  136 ttcgttg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatt 232  Q
    ||  | |   | |||||||||||||||||| ||  |||||||||| | | |||| || || |||| |||||||||||  ||||||| | ||| |||||||    
T  4170953 tttttagaagggggtgagtagtgacgatggatg--gttggatatcatttatacaatggtcattttcgtgaaggagtctattttaggtgatgacgtatatt 4171050  T
Q  233 ttg-gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||  ||| ||||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  4171051 ttttgtgggtgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtatt 4171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 23328337 - 23328167
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||||||||| |||||||||||||| |||||||||   || || ||| | |||||||||||||||||||||||||||| |||||||| | |||||||    
T  23328337 tctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgttgaagtctgggag 23328238  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    |||| |||||||| ||||||| |||| ||||||||||||||||||||| |  ||||||| ||| ||||||||    
T  23328237 tttt-attttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtg 23328167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 316
Target Start/End: Original strand, 37123482 - 37123760
Alignment:
Q  27 ggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt 126  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||  | ||||||||||| ||||||||||||||| ||||  |||||| |||||| |||||    
T  37123482 ggatcggagttcgataggtggtggaagctgtatgatctttcagacatgagcttttcga-tgtggctcagctttgatgttctggactgagagttt-aattt 37123579  T
Q  127 tgaggggtgttcgt---tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 223  Q
     ||||||||||| |   ||| ||||||||||||| |  |||| ||||||||||||| ||||||||| ||||||| |||||| ||||  |||||   ||||    
T  37123580 ggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtg 37123679  T
Q  224 atgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||| |||||||||| |||||||| |||            ||||||||||||||||||||||||| |||| || | ||||||| |||||||||    
T  37123680 atgtgtattttggtgggtgttgtcttca------------agggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtatt 37123760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 28937705 - 28937427
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||| |||| ||| || ||    
T  28937705 tttctttcggtggatcggaggtcaagagatggtggaagctgaatgatgtttcagggaggagctttttggatgtggctca-ctttgatgttcaggtctagg 28937607  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    || |||  |||| |||||||    ||  |||| ||||||||||| ||||||||| | ||||||||||| ||||||||| ||  ||| ||||||| ||| |    
T  28937606 ag-tttgttttttaggggtgttttttacttggaggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctg 28937508  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 302  Q
    ||||||| ||        ||||||||| |||||||| |  | ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  28937507 ttttaggtgg--------attttggtgggtgttgtcat-tggggtgt-ttttagggtgtttattttcgggtgttccgcttatatacggcgc 28937427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 316
Target Start/End: Complemental strand, 50519047 - 50518780
Alignment:
Q  46 ggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttg 142  Q
    ||||||||||||||| |||||  | |||||| |||| || |||||||||||||||||||| |||||  ||| ||| | |||| |||||||||   | |||    
T  50519047 ggtggaagctgaatggtcttttggttaggagttttt-gattgtggctcagctttggtgttcaggacgaggaattt-attttttaggggtgtttttctttg 50518950  T
Q  143 gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtg 242  Q
    | |||||||||||||||||| |   ||| |||||||| ||||||||| | || |  ||||||||||| |||||||  ||||| || ||||||| || |||    
T  50518949 gaggtgagtagtgacgatggatc--gttagatatcgtttttacagtggtggtatc-gtgaaggagtctgttttagatggtgaggtgtattttgttgggtg 50518853  T
Q  243 ttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    | |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  50518852 tggtcctcatgggtgt-ttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtatt 50518780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 45398890 - 45399060
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||| ||||| |||||||||||||| |||||||||| ||| || ||| | || |||||||||||||||||| || ||| |||||||| |  ||||||    
T  45398890 tctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggag 45398989  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    || || ||||| |||||||||||||| |||||||||||||||||| ||||  ||||||| ||||||||||||    
T  45398990 ttcta-ttttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtg 45399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 25647776 - 25648073
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagg-actgg 114  Q
    ||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| | || |||||||||| | ||||||||| ||||||| | ||| | |||    
T  25647776 tttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtgctcaggaagtgg 25647875  T
Q  115 gagttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    | |  ||| |||| |||||||   ||  |||| |||||||||||| ||||| ||  |||||||||||| ||| ||||| | | ||| |||| |||||  |    
T  25647876 ggg--ttattttttaggggtgtttttatttgggggtgagtagtgatgatggatg--gttggatatcgt-ttttcagtggt-ggtttcgtgatggagtatg 25647969  T
Q  212 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    ||||| | |||||  | |  ||||||| |||| |||||||   |||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  25647970 ttttatgtggtgacatgttatttggtgggtgtggtcctcatgtgtgt-ttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgttt 25648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 40023559 - 40023389
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    |||||||||||||  |||| || ||||| |||||||||| ||| || ||| | |||||||||||||||||||||||||||  |||||||  | |||||||    
T  40023559 tctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggag 40023460  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    |||| ||||||||||| |||| || | | |||||||||||||||| || |  |||||| |||||||||||||    
T  40023459 tttt-attttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtg 40023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 43012469 - 43012677
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 116  Q
    |||||||||| ||  ||||||| ||||| ||||||| || |||||| ||| |  ||| ||| |||||| ||||||||||||| ||||||| || || |||    
T  43012469 tctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctagga 43012568  T
Q  117 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 216  Q
    |||||||||| ||||| ||||| |||| ||||||||||| ||||||  |  | |||||| |||||||||| |||| ||||||||||||||||| ||||||    
T  43012569 gttttaattt-gaggg-tgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgtttta 43012666  T
Q  217 ggcggtgatgt 227  Q
    |  ||||||||    
T  43012667 gatggtgatgt 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 7104936 - 7105232
Alignment:
Q  19 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttgg-tgttgaggactgggag 117  Q
    |||| ||||||| | |||| |||||||||||||||||| |||||  ||| | || ||||||||||||| |||||||| ||| | ||||  ||||||||||    
T  7104936 cttttggtggatcgaaggttgagaggtggtggaagctgtatgatgcttc-gttatgagcttttcgaatatggctcagtttttgatgttagggactgggag 7105034  T
Q  118 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 217  Q
    ||||| |||| |||||||||  || | ||||||||||||||||||||| || ||||||  || |||| |||||| |||||  ||||| |||| |||||||    
T  7105035 tttta-ttttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttcttgaagaagtctgttttag 7105133  T
Q  218 gcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggt-----gtttattttcgggtgttccgcctatatacggcgcctttagtttg 312  Q
    | |||||   || |||||| | || ||||| || |  |||| |||||||||     ||||||||| ||||||||||||| |||| || | ||||||||||    
T  7105134 gtggtgac--atgttttggcgggt-ttgtcttcgggcgtgttttttagggttgggtgtttatttttgggtgttccgcctttataaggtgtctttagtttg 7105230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 39021267 - 39021094
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||| ||||||| |||||||||||| |||||| |||||| |||||||| | | || ||| |||||| |||||||| |||||||||||||||||||| |    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  116 agttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 189  Q
    || ||| ||||||| | ||| ||| ||||  |||||||||||||||| | |  || ||||||||| |||||||||    
T  39021167 ag-tttcattttgacgcgtgtttctttgggtgtgagtagtgacgatgagaggcgtgggatatcgtttttacagtg 39021094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 300
Target Start/End: Complemental strand, 48893214 - 48893060
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 244  Q
    ||||||||||||||| || |||  |||||||| || ||||| ||  |||||||||| ||||||||  ||||||| |||||  | |||||||||| |||||    
T  48893214 ggtgagtagtgacgacggatgacattggatattgtttttaccgtaatcgtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgtt 48893115  T
Q  245 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggc 300  Q
    ||| |||| ||||| |||||  |||||||||||||| |||||| | ||||||||||    
T  48893114 gtcttcaggggtgt-ttttaaagtgtttattttcggatgttcctcttatatacggc 48893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 313
Target Start/End: Original strand, 14194154 - 14194317
Alignment:
Q  145 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 244  Q
    |||||||||||||||||| ||  ||||||||||||  || |||||  || ||| |||| |||||| |||||||| ||||| || |||||||||| ||||     
T  14194154 ggtgagtagtgacgatggatg--gttggatatcgttatt-cagtgg-cgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtg 14194249  T
Q  245 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 313  Q
    |||||||   |||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||| ||||||    
T  14194250 gtcctcatgagtgt-ttttaggatgtttattttcggatgttccgcctatataaggcaccttttgtttgt 14194317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 20611876 - 20612054
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| || || ||    
T  20611876 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttg-ggtctagg 20611974  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 197  Q
    ||||||| || |||||| ||||| |||  ||||||||||||||||||| |||| ||||||  |||||||||||||| |||||    
T  20611975 agtttta-ttctgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 53247993 - 53248200
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||||||||||| |||||  |||  || || |||||| ||| | || | ||| |||||| |||||||||| || ||||||| || ||| |    
T  53247993 tctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgag 53248092  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 215  Q
    |||||| |||||||| | ||||| |||  ||||||||||||||||||| | || ||| || ||||||||||||||| |||||| |   |||||| |||||    
T  53248093 agtttttattttgagag-tgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgttttttt---ggagtctgtttt 53248188  T
Q  216 aggcggtgatgt 227  Q
    ||| ||||||||    
T  53248189 aggtggtgatgt 53248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 47235791 - 47235971
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||  ||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| ||||| ||||||| ||||||| || ||| |    
T  47235791 tctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcg 47235890  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  47235891 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 47235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 14280343 - 14280240
Alignment:
Q  211 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtt 310  Q
    |||||||| ||||| || |||||| ||| ||||||||||||| | | | ||| || ||||||| ||||||||||||||||||||||||||||||||| ||    
T  14280343 gttttaggtggtgacgtgtattttagtgggtgttgtcctcag-gatat-tttcagagtgtttactttcgggtgttccgcctatatacggcgcctttaatt 14280246  T
Q  311 tgtatt 316  Q
    ||||||    
T  14280245 tgtatt 14280240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 14755255 - 14755166
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 105  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||| |  | |||||| | | |||||||||||||||||||||    
T  14755255 tttctttcgatggatcggaggtcgagagatggtggaagttgaatgatctttcggggatgagcttgttggatgtggctcagctttggtgtt 14755166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 19176596 - 19176806
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatc--tttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactgg 114  Q
    ||||| ||||||| ||||||||  |||| |||||||||| ||||||  |||| |  ||| ||| |||| ||||||||||||||| ||||| | || ||||    
T  19176596 tcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgg 19176695  T
Q  115 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 214  Q
    | |||||| ||||||||| ||||| || | |||||||||||||||||| || || ||||||  |||||||| ||||| |||||| |   |||||| ||||    
T  19176696 gtgtttta-ttttgaggg-tgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgcttgttttttttttggagtctgttt 19176793  T
Q  215 taggcggtgatgt 227  Q
    |||| ||| ||||    
T  19176794 taggtggttatgt 19176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 46358135 - 46358071
Alignment:
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 318  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtatttt 46358071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 14893264 - 14893318
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  14893264 ttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgta 14893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 33143939 - 33143643
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||| | |  |||||| ||||    ||||| ||||||||||||||  ||| ||||    
T  33143939 tttctttcggtggatcagaggtcgcgaggtggtggaagctgattgatctcttatataggagttttttcgttgtggatcagctttggtgttttggaatggg 33143840  T
Q  116 agttttaattttgaggggt--gttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 213  Q
    | ||    || ||||||||   ||  ||   ||||||||||||||| || ||  |||||||||||| | | ||||| | ||||| ||||||||||  |||    
T  33143839 attt----ttctgaggggttgttttcttaagggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgtt 33143744  T
Q  214 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 313  Q
    ||||| ||||| || | || |||||  |||| |||||   || || |||| |||||||| ||||||||||||||||||||||| | ||||||| | ||||    
T  33143743 ttaggtggtgacgtgttttatggtggatgttatcctcttgggagt-tttttgggtgttt-ttttcgggtgttccgcctatatatgacgccttttggttgt 33143646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 34475742 - 34475564
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||||||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| ||  || |    
T  34475742 tctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgag 34475643  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    ||||||    || | |||||||| |||  ||||||||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  34475642 agtttt----tttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgttttt 34475564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 1652628 - 1652569
Alignment:
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    |||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1652628 ggtgtctttgtgggtgtttattt-cgggtgttccgcctatatacgacgcctttagtttgta 1652569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 2392494 - 2392321
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | ||||| || ||| || ||||||||||||| ||||||| || || ||    
T  2392494 tctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctagg 2392395  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 191  Q
    ||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||||||||||    
T  2392394 agttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 2392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 25594406 - 25594304
Alignment:
Q  147 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 246  Q
    ||||||||| ||||||||| | ||||||||||| ||| ||||| ||||||| ||||||||||  ||||||||  ||||||| |||| ||||| |||||||    
T  25594406 tgagtagtggcgatgggtggt-ttggatatcgttttttcagtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgt 25594309  T
Q  247 cctca 251  Q
    |||||    
T  25594308 cctca 25594304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 9583972 - 9583852
Alignment:
Q  86 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttac 185  Q
    |||||||| |||| ||| ||| || |||||||||||| ||||||||  ||||| |||  |||||||||||||||| || | || ||||||||||||||||    
T  9583972 tgtggctctgcttgggttttggggtctgggagtttta-ttttgagga-tgttctttgc-ggtgagtagtgacgataggcggtggtggatatcgtgtttac 9583876  T
Q  186 agtgctcgtttttgtgaaggagtc 209  Q
     ||||| |||||| ||||||||||    
T  9583875 ggtgcttgtttttttgaaggagtc 9583852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 41039463 - 41039527
Alignment:
Q  231 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 296  Q
    |||||||| |||||||| |||  ||||| ||||||||||||||||||| |||||||||||||||||    
T  41039463 ttttggtgggtgttgtcttcacgggtgt-ttttagggtgtttattttctggtgttccgcctatata 41039527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 2394190 - 2394085
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || || ||||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  2394190 aatgtggctcagcttgggtgttggggtctaggagttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 2394093  T
Q  184 acagtgct 191  Q
    ||||||||    
T  2394092 acagtgct 2394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 299
Target Start/End: Original strand, 12086483 - 12086615
Alignment:
Q  167 tgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagg 266  Q
    ||||| ||||||| ||||||||| |||||||  ||||    || |||||||| |||||||| |||||||||| |||| ||| |  | ||| ||||||| |    
T  12086483 tgttgaatatcgtttttacagtgatcgttttcttgaatacatctgttttaggtggtgatgtttattttggtgggtgtggtcttagggggtatcttttaag 12086582  T
Q  267 gtgtttattttcgggtgttccgcctatatacgg 299  Q
     ||||||||||||  |||||||||| |||||||    
T  12086583 atgtttattttcgaatgttccgcctttatacgg 12086615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 21342629 - 21342733
Alignment:
Q  18 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 117  Q
    ||||||| |||||  ||||||||||||| ||||||||||  || || ||| | ||| |||||||||||||||||||  ||| |||||||| | ||| |||    
T  21342629 tctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctcgacttgggtgttgaagtctgagag 21342728  T
Q  118 tttta 122  Q
    |||||    
T  21342729 tttta 21342733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 30352359 - 30352249
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || || ||||||||   ||| |||| ||||| |||  | ||||||||||||||||||| || |||||| |||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagtttt---ttttaggg-tgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgttt 30352264  T
Q  184 acagtgctcgttttt 198  Q
    ||||| || ||||||    
T  30352263 acagtacttgttttt 30352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 32010117 - 32010177
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| ||| ||||| |||||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtatt 32010177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 14194040 - 14194109
Alignment:
Q  32 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggt 102  Q
    ||||||||||||||| ||||||||||||  |||||| | ||||||||||||| | ||||||||| ||||||    
T  14194040 ggaggtcgagaggtg-tggaagctgaattgtctttcggttaggagcttttcggacgtggctcagttttggt 14194109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 14755016 - 14754974
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  14755016 ttttagggtgttccgcctatgtacggcgcctttagtttgtatt 14754974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 46358376 - 46358328
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt 65  Q
    ||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  46358376 ttctttcagtggattggaggttgagaggtggtggaagcttattgatctt 46358328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 1652691 - 1652648
Alignment:
Q  206 agtcagttttaggcggtgatgtatattttggtgagtgttgtcct 249  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  1652691 agtcagttttagggggtgatgtttattttggtgggtgttgtcct 1652648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 17551113 - 17551190
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 163  Q
    |||||||||||| || ||||||| || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  17551113 aatgtggctcagtttgggtgttggggtctgagagtttta-ttttgaggg-tgttctttgtcggtgagtagtgacgatggg 17551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 31482977 - 31483119
Alignment:
Q  18 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||||||||||||||||| |||| | |||  ||||| |||||| ||| | |||| ||| |||| ||||||||||||||| ||||||| ||  || |    
T  31482977 tctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgag 31483076  T
Q  116 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 161  Q
    |||||   |||| | |||||||| |||  ||| |||||||||||||    
T  31483077 agttt---tttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 25594255 - 25594217
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacg 298  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  25594255 ttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 37999125 - 37998971
Alignment:
Q  41 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcg 139  Q
    ||||||||||||||| | ||||||||  | ||||||||||| | | |||| ||| |||||||||| ||||| ||||  ||||||||| | ||||| ||      
T  37999125 gaggtggtggaagctaattgatcttttggataggagctttttggaggtggatcaactttggtgtttaggac-gggaagtttaattttaatgggtgttttt 37999027  T
Q  140 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 197  Q
    ||  | |||||| ||||||||| |||  |||||||||||| || |||||| |||||||    
T  37999026 ttttttgtgagtggtgacgatgagtg--gttggatatcgttttaacagtggtcgtttt 37998971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 32010027 - 32010072
Alignment:
Q  191 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttgg 236  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  32010027 tcgttttcgtgaaggagtctgttttaggtggtgatgtttattttgg 32010072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 45163983 - 45164126
Alignment:
Q  52 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 150  Q
    ||||| |||||| ||| | |||| ||| |||||| ||||||| ||||| ||||||| || || ||||||||| ||||||||| ||||  |||  |||||     
T  45163983 agctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtaggtgat 45164080  T
Q  151 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 196  Q
    ||||||||||||| | || || ||| |||||||||| |||| ||||    
T  45164081 tagtgacgatgggcggtgatgaataccgtgtttacaatgcttgttt 45164126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 27399218 - 27399270
Alignment:
Q  199 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctca 251  Q
    ||||||||| | |||||||| | |||||| |||||||||| ||||||||||||    
T  27399218 gtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctca 27399270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 37998956 - 37998900
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||| |||||||||||||||   ||||||||||||||||| | ||| |||||||||    
T  37998956 ttttaaggtgtttattttcggacattccgcctatatacggcacattttgtttgtatt 37998900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 20701794 - 20701488
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||| | |||| ||    
T  20701794 tttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttgttgttcaagactagg 20701695  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 211  Q
    || |||  |||| | |||||    ||  |||| ||||||||||||||||||||  | ||||||||||| ||||||||| | | ||| ||||| | ||| |    
T  20701694 ag-tttgtttttaaagggtgttttttttttgggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctg 20701596  T
Q  212 ttttaggcggtgatgtatat-----tttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 306  Q
    || |||| ||||| || | |     |||| || |||||||||||   ||||  |||||| |||||||||| | |||||||||||||||||| ||||||||    
T  20701595 ttataggtggtgaagtgttttagggtttgatgggtgttgtcctcgtgggtg--ttttagtgtgtttatttccaggtgttccgcctatatacagcgccttt 20701498  T
Q  307 agtttgtatt 316  Q
     |||||||||    
T  20701497 tgtttgtatt 20701488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 15120588 - 15120293
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttc-agctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 114  Q
    ||||||| ||||||| |||||||||||||||||||||||||  ||||||||  || ||  || |||||| | ||||||   ||||||||||||||||||     
T  15120588 tttcttttggtggatcggaggtcgagaggtggtggaagctggttgatctttttagatattagattttcggacgtggctttactttggtgttgaggactgc 15120489  T
Q  115 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 214  Q
    | |||| |||||| |||| ||||  |||  |||||||||||||||||| || |||||||||| ||    | |||  |  |||||||||| ||||| ||||    
T  15120488 gggttt-aatttttagggatgtttcttgagggtgagtagtgacgatggatggtgttggatattgt----aaagtcgtt-tttttgtgaatgagtctgttt 15120395  T
Q  215 taggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    |||| |||||||| ||||||||||  |||||||||||  | ||| |||||||||||||||| || | ||||| ||||| ||||| || ||||||||||||    
T  15120394 taggtggtgatgtgtattttggtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgcctacatacgtcgtctttagtttgta 15120295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 3880589 - 3880404
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 115  Q
    |||||||| |||||| |||||||||| ||||||||||| ||||| ||||||| | || |||||||| | ||||||||||||||||||||| | |||| ||    
T  3880589 tttctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagctttttggatgtggctcagctttggtgttcaagacttgg 3880490  T
Q  116 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 198  Q
    || |||||||||||||||||    ||| | || |||||||||||||||  | || ||||||||||||| |||| |||| ||||||||    
T  3880489 ag-tttaattttgaggggtgttttttcttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggtcgttttt 3880404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 17278215 - 17278153
Alignment:
Q  254 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  17278215 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcctttagattgtatt 17278153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 13423603 - 13423716
Alignment:
Q  77 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt---tgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatgttgg 172  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| | |||   ||||||||| ||| |||| |||||||||||| |||||||| ||| ||    
T  13423603 cttttcggatgtggctcagctttggtgttgaggacttagagtttaattttgactgaggggtgtttcattgggggtgagtagtgaagatgggtgttgtggg 13423702  T
Q  173 atatcgtgtttaca 186  Q
    || |||| ||||||    
T  13423703 atgtcgtttttaca 13423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 6860348 - 6860423
Alignment:
Q  242 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg--cctatatacggcgcctttagtttgtatt 316  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||||  ||||||||||||| |||| |||||||||    
T  6860348 gttgtccgcataggtgt-ttttagggtgtttatttttgggtgttccgcccctatatacggcgtcttttgtttgtatt 6860423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 32935305 - 32935099
Alignment:
Q  41 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 140  Q
    |||||||||||||||| ||||||||||    | ||| |||||| ||||  ||||||||||||| |||| |||| ||| ||| |||| ||||| ||||  |    
T  32935305 gaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgagcactgtgag-tttcatttagagggatgttttt 32935207  T
Q  141 tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgag 240  Q
    ||| ||| |||||||| |||||||| |  || ||||||| |||  || |  |||||| || ||||||||  ||||||| |||| ||| |||||||||| |    
T  32935206 tgg-ggtcagtagtgatgatgggtggttatgtatatcgt-ttttgagggggcgttttcgttaaggagtctattttaggtggtggtgtttattttggtggg 32935109  T
Q  241 tgttgtcctc 250  Q
    ||||||||||    
T  32935108 tgttgtcctc 32935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 10541993 - 10542105
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||| ||| |||  ||||||||||||||||||| | || |||||| ||| |||    
T  10541993 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtattctttgtgggtgagtagtgacgatgggcggtggtggataccgtattt 10542090  T
Q  184 acagtgctcgttttt 198  Q
    | |||||| ||||||    
T  10542091 aaagtgcttgttttt 10542105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 14663238 - 14663343
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    |||||||||| |||| | ||||| ||  ||||||||||| ||||||||  ||||| |||  ||||||||||||||||||| | || ||||||| ||||||    
T  14663238 aatgtggctcggcttggatgttggggtttgggagtttta-ttttgagga-tgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgttt 14663335  T
Q  184 acagtgct 191  Q
    ||||||||    
T  14663336 acagtgct 14663343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 26215826 - 26215711
Alignment:
Q  203 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 302  Q
    |||| ||||||||||| |||| ||| |||||||||| |||||| || | | ||| |||||   ||||||| ||||| |||| ||||| ||||||| | ||    
T  26215826 aggaatcagttttagggggtgttgtttattttggtgggtgttgaccgctggggtatctttattggtgtttgttttcaggtggtccgcatatatacagtgc 26215727  T
Q  303 ctttagtttgtatttt 318  Q
    ||||| ||||||||||    
T  26215726 ctttaatttgtatttt 26215711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 3880359 - 3880301
Alignment:
Q  260 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 318  Q
    ||||||||||||||||||  |||||||||| |||||||||  ||||| |||||||||||    
T  3880359 ttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtatttt 3880301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 12794465 - 12794505
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  12794465 ttttcggatgttccgtctatatacggcgcctttagtttgta 12794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 20500011 - 20500049
Alignment:
Q  17 ttctttcggtggattggaggtcgagaggtggtggaagct 55  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  20500011 ttctttcgatggattggaggttgagaggtggtggaagct 20500049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 20500282 - 20500323
Alignment:
Q  255 gtgtcttttagggtgtttattttcgggtgttccgcctatatac 297  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  20500282 gtgtcttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 26534464 - 26534424
Alignment:
Q  274 ttttcgggtgttccgcctatatacggcgcctttagtttgta 314  Q
    ||||| ||||||||||||||||||| ||||||| |||||||    
T  26534464 ttttcaggtgttccgcctatatacgacgccttttgtttgta 26534424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 19473 - 19687
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 114  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||| |||| |  |||||||||||||||||||||| |||||||||||||||| |      
T  19473 tttctttcggtggatcggaggtcgagagttggtggaagctgaataatcttttcggacaggagcttttcgaatgtggctctgctttggtgttgaggatt-- 19570  T
Q  115 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 214  Q
    ||  |||| |||||| |||| ||  |||| || |||||||||||||| |||  |||||||||||| |||| || | ||||||||| ||||||||  ||||    
T  19571 gaagtttatttttgaagggtatttcttgg-ggcgagtagtgacgatgtgtg--gttggatatcgtttttatagaggtcgtttttgagaaggagtttgttt 19667  T
Q  215 taggcggtgatgtatatttt 234  Q
    |||| |||||||| ||||||    
T  19668 taggtggtgatgtgtatttt 19687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 140 - 311
Target Start/End: Complemental strand, 1522 - 1347
Alignment:
Q  140 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 239  Q
    |||| ||| ||||||||||| | ||| ||||||||||||| ||||||||| | ||| | ||| |||||||||||||||| ||||| || |||||| |||     
T  1522 ttgggggtcagtagtgacgacgtgtggtgttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgg 1423  T
Q  240 g---tgttgtcctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagttt 311  Q
    |   ||||||||| || ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  1422 gttttgttgtccttaggggtgttttttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 42129 - 41915
Alignment:
Q  16 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 114  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |      
T  42129 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt-- 42032  T
Q  115 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 214  Q
    ||  |||| |||| | |||| ||  |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  ||||    
T  42031 gaagtttatttttaaagggtatttcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttt 41935  T
Q  215 taggcggtgatgtatatttt 234  Q
    |||| |||||||| ||||||    
T  41934 taggtggtgatgtgtatttt 41915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 746 - 686
Alignment:
Q  256 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 316  Q
    ||||||||| |||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  746 tgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtatt 686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 916 - 790
Alignment:
Q  123 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 221  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  916 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 820  T
Q  222 tgatgtatattttggtgagtgttgtcctca 251  Q
    |||||| ||||||||||  |||||||||||    
T  819 tgatgtttattttggtgtatgttgtcctca 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 5867 - 5985
Alignment:
Q  84 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 183  Q
    ||||||||||||||| ||||||| |  |||||||||||| ||||||||| ||||  |||  |||||||||||| |||||| | || |||||| | |||||    
T  5867 aatgtggctcagcttgggtgttgggatctgggagtttta-ttttgaggg-tgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgttt 5964  T
Q  184 acagtgctcgtttttgtgaag 204  Q
    || ||||| |||||| |||||    
T  5965 acggtgcttgtttttttgaag 5985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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