View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_26 (Length: 325)
Name: NF17188_low_26
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 52396091 - 52396408
Alignment:
| Q |
11 |
cagagaattacgattattaataggattgtgagaannnnnnngacttacataggtgttgagctggcgaatgaagctagaaaaattattatgcttaaagtac |
110 |
Q |
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| T |
52396091 |
cagagaattacgattattaataggattgtgagaatttttttgacttacataggtgttgagctggcgaatgaagctagaaaaattattatgcttaaagtac |
52396190 |
T |
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| Q |
111 |
ttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgagaagcactccatgaaacaatcgggtcagtttccggatcatcca |
210 |
Q |
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| T |
52396191 |
ttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgagaagcactccatgaaacaatcgggtcagtttccagatcctcca |
52396290 |
T |
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| Q |
211 |
ccatttcaaaagttttcttgagaaacggtggtggaccaacctcatgtagcccttccattggttttggaaacctgagtgaagatgaagcgt---tagcacc |
307 |
Q |
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| T |
52396291 |
ccatttcaaaagtcttcttgagaaacggtggtggaccaacctcatgtagcccttccattggttttggaaacctgagtgaagatgaagcgtgagcagcacc |
52396390 |
T |
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| Q |
308 |
gtcgtcttcttcaagaac |
325 |
Q |
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| T |
52396391 |
gtcgtcttcttcaagaac |
52396408 |
T |
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