View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_low_3 (Length: 679)
Name: NF17188_low_3
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 14 - 663
Target Start/End: Complemental strand, 27063002 - 27062359
Alignment:
| Q |
14 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27063002 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
27062903 |
T |
|
| Q |
114 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27062902 |
gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaaat------ |
27062809 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062808 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgt |
27062709 |
T |
|
| Q |
314 |
tagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062708 |
tagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtga |
27062609 |
T |
|
| Q |
414 |
actcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactcttat |
513 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062608 |
actcgatgaaatgccactctataaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactctttg |
27062509 |
T |
|
| Q |
514 |
gagacaaatcaagaggatggtttaagcatggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttag |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062508 |
gagacaaatcaagaggatggtttaagcatggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttag |
27062409 |
T |
|
| Q |
614 |
attttggaagttatgaattagtgaattttctacctgcaccatgcaagatg |
663 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062408 |
attttggaggttatgaattagtgaattttctacctgcaccatgcaagatg |
27062359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 663
Target Start/End: Complemental strand, 27070075 - 27069426
Alignment:
| Q |
14 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| ||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27070075 |
aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt |
27069976 |
T |
|
| Q |
114 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat |
213 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27069975 |
gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaa |
27069876 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgt |
313 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
27069875 |
atagggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgt |
27069776 |
T |
|
| Q |
314 |
tagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtga |
413 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||| |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27069775 |
tagttggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtga |
27069676 |
T |
|
| Q |
414 |
actcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactcttat |
513 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | || ||||| |||||| |
|
|
| T |
27069675 |
gctcgatgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgattatgttactaattcaatcaactctgtg |
27069576 |
T |
|
| Q |
514 |
gagacaaatcaagaggatggtttaagcatggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttag |
613 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
27069575 |
gagacaaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaagcatttgggttttcatgaaaatatag |
27069476 |
T |
|
| Q |
614 |
attttggaagttatgaattagtgaattttctacctgcaccatgcaagatg |
663 |
Q |
| |
|
|||||||| | |||||| | |||||||| |||| ||||| ||||||||| |
|
|
| T |
27069475 |
attttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatg |
27069426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 511
Target Start/End: Complemental strand, 27086131 - 27085634
Alignment:
| Q |
14 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| ||| |||| | ||||||||||| ||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
27086131 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27086032 |
T |
|
| Q |
114 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat |
213 |
Q |
| |
|
|||||| ||||||| || ||||| || ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27086031 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat |
27085932 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| | |
|
|
| T |
27085931 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattg |
27085832 |
T |
|
| Q |
314 |
tagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtga |
413 |
Q |
| |
|
|||||||| ||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
27085831 |
cagttggtagtagacgcaacttaaaggattatgatactttacctaaagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgt |
27085732 |
T |
|
| Q |
414 |
actcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactctt |
511 |
Q |
| |
|
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
27085731 |
gctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctt |
27085634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 190 - 649
Target Start/End: Complemental strand, 27056790 - 27056332
Alignment:
| Q |
190 |
agtttgatgaatgaaaatgaaaata-taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagc |
288 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
27056790 |
agtttgatgaataaaaatgaaaaaaataaggttcacaacttttga-gtacttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagc |
27056692 |
T |
|
| Q |
289 |
aatgacaaaacaatgctaaatgtgttagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatg |
388 |
Q |
| |
|
|||| ||||| |||| | | ||||||||| ||||| |||||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
27056691 |
aatggtgaaacagtgctgaccattgcagttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattctactatagatg |
27056592 |
T |
|
| Q |
389 |
caaaagttgttttaaaagtgagtgaactcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgatta |
488 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27056591 |
taaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgatta |
27056492 |
T |
|
| Q |
489 |
tgtaagaaactcaataaactcttatgagacaaatcaagaggatggtttaagcatggaattggaagctagtggtgcagtaacggttctaacagagtggaaa |
588 |
Q |
| |
|
||| | ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || | |||| |
|
|
| T |
27056491 |
tgtcacaaactcaataaactctttggagacgaatcaagaggatggtttgagcatggaattggaagatagtggtgcagtaacggttctagt-gaattgaaa |
27056393 |
T |
|
| Q |
589 |
catttgggttttcaggaaaatttagattttggaagttatgaattagtgaattttctacctg |
649 |
Q |
| |
|
||||||| |||||||||||||||| |||||| | | |||||||||||||||||| |||||| |
|
|
| T |
27056392 |
catttggattttcaggaaaatttaaattttgaaggctatgaattagtgaattttttacctg |
27056332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 27041653 - 27041375
Alignment:
| Q |
14 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||||| ||| | |||| ||||||||||| ||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
27041653 |
aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27041554 |
T |
|
| Q |
114 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat |
213 |
Q |
| |
|
|||||| ||||||| || ||||| || ||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
27041553 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaa |
27041454 |
T |
|
| Q |
214 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
292 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27041453 |
atgaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatg |
27041375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 27098796 - 27098336
Alignment:
| Q |
15 |
acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg |
114 |
Q |
| |
|
|||||||||||||||||| | | ||||| |||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| || |
|
|
| T |
27098796 |
acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27098697 |
T |
|
| Q |
115 |
aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaata |
214 |
Q |
| |
|
||||||| || ||| | |||| ||||| |||||||||| | || || |||| ||||||||| ||||||||||| |||||||| |||| || ||||| |
|
|
| T |
27098696 |
aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata |
27098597 |
T |
|
| Q |
215 |
taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgtt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||| | || | | | |
|
|
| T |
27098596 |
taaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgt |
27098497 |
T |
|
| Q |
315 |
agttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaa |
414 |
Q |
| |
|
|| ||||| ||||| ||||||| ||||| ||| |||||||||| || |||||||| ||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
27098496 |
agcaggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgag |
27098397 |
T |
|
| Q |
415 |
ctcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctt |
475 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| || | |||||||||||| ||||||| |
|
|
| T |
27098396 |
ctcgatgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgctt |
27098336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 359 - 511
Target Start/End: Complemental strand, 27041349 - 27041197
Alignment:
| Q |
359 |
aagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaactcgacgaaatgccactctatgaaatcgttaagctgattaaaga |
458 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
27041349 |
aagggtattatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaaccattaagctgattaaaga |
27041250 |
T |
|
| Q |
459 |
gactaaaaatattgctttcactgctgattatgtaagaaactcaataaactctt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
27041249 |
gactaaaaatattgctttcactgctgattatgttacaaactcaataaactctt |
27041197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 27105795 - 27105335
Alignment:
| Q |
15 |
acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg |
114 |
Q |
| |
|
|||||||||||||||||| | | ||||| ||||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| || |
|
|
| T |
27105795 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27105696 |
T |
|
| Q |
115 |
aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaata |
214 |
Q |
| |
|
|||||| || ||| | |||| ||| | |||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| || | || |
|
|
| T |
27105695 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
27105596 |
T |
|
| Q |
215 |
taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgtt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| || | | | | |
|
|
| T |
27105595 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgt |
27105496 |
T |
|
| Q |
315 |
agttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaa |
414 |
Q |
| |
|
|| |||||| ||||| || |||| ||||| |||| |||||||||| || |||||||| ||||| | |||||||| ||| |||||||| || || |
|
|
| T |
27105495 |
agctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgag |
27105396 |
T |
|
| Q |
415 |
ctcgacgaaatgccactctatgaaatcgttaagctgattaaagagactaaaaatattgctt |
475 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| || || | |||||||||||| ||||||| |
|
|
| T |
27105395 |
ctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgctt |
27105335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 246 - 500
Target Start/End: Complemental strand, 27045834 - 27045580
Alignment:
| Q |
246 |
ttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgttagttggtatcagacgaaacttgatggattat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| | ||| ||||||||||||| ||||| | | ||| | |||| |
|
|
| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
27045735 |
T |
|
| Q |
346 |
gaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaactcgacgaaatgccactctatgaaatcgtta |
445 |
Q |
| |
|
|| |||| |||| |||||||||||| ||| |||| | |||| ||||||||| |||||||| ||||| ||| | |||||||||||||||||||| |||| |
|
|
| T |
27045734 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
27045635 |
T |
|
| Q |
446 |
agctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactc |
500 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27045634 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
27045580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 542 - 663
Target Start/End: Complemental strand, 27041196 - 27041075
Alignment:
| Q |
542 |
tggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttagattttggaagttatgaattagtgaattt |
641 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||| | | ||||||||||||||||| |
|
|
| T |
27041196 |
tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattt |
27041097 |
T |
|
| Q |
642 |
tctacctgcaccatgcaagatg |
663 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
27041096 |
tttaactgcaccatgcaagatg |
27041075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 542 - 663
Target Start/End: Complemental strand, 27085633 - 27085512
Alignment:
| Q |
542 |
tggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatttagattttggaagttatgaattagtgaattt |
641 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||| | | ||||||||||||||||| |
|
|
| T |
27085633 |
tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattt |
27085534 |
T |
|
| Q |
642 |
tctacctgcaccatgcaagatg |
663 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
27085533 |
tttaactgcaccatgcaagatg |
27085512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 27098259 - 27098216
Alignment:
| Q |
558 |
tggtgcagtaacggttctaacagagtggaaacatttgggttttc |
601 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27098259 |
tggtgcagtaacggttctgacagagtggaaacatttaggttttc |
27098216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 27105257 - 27105215
Alignment:
| Q |
559 |
ggtgcagtaacggttctaacagagtggaaacatttgggttttc |
601 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27105257 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttc |
27105215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 664
Target Start/End: Complemental strand, 27045466 - 27045413
Alignment:
| Q |
611 |
tagattttggaagttatgaattagtgaattttctacctgcaccatgcaagatgt |
664 |
Q |
| |
|
||||||||||| | ||||||| |||||||||| |||| ||||||||||| |||| |
|
|
| T |
27045466 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgt |
27045413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 604
Target Start/End: Complemental strand, 19414277 - 19414221
Alignment:
| Q |
548 |
tggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcagg |
604 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||||||||||| |||||||| ||||||| |
|
|
| T |
19414277 |
tggaatctagtggtgcagtaacagttttgacagagtggaagcatttgggctttcagg |
19414221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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