View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_32 (Length: 286)
Name: NF17188_low_32
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 46301217 - 46300950
Alignment:
| Q |
1 |
aatcacgccgtcagcataggcggtcatgccgtggatggatgttgcgagtttttagctgccggagaggaaggaacactggaagcggtgatttgtgctgctt |
100 |
Q |
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| T |
46301217 |
aatcacgccgtcagcataggcggtcatgccgtggatggatgttgcgagtttttagctgccggagaggaaggaacactggaagcggtgatttgtgctgctt |
46301118 |
T |
|
| Q |
101 |
gtggctgtcaccggaacttccaccgcaaagaaatcgacggtgaattcactacccagcggtctcatcaccctcaacaccaccaccatcaattatcacctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46301117 |
gtggctgtcaccggaacttccaccgcaaagaaatcgacggtgaattcactacccagcggtctcatcaccctcaacaccaccaccatcaattatcacctta |
46301018 |
T |
|
| Q |
201 |
ctaccaccgtgcagctttacctcctccgcctggttttcaccaccactccgtaactccacctatatcac |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46301017 |
ctaccaccgtgcagctttacctcctccgcctggttttcaccaccactccgtaactccacctatatcac |
46300950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 27508160 - 27508264
Alignment:
| Q |
40 |
tgttgcgagtttttagctgccggagaggaaggaacactggaagcggtgatttgtgctgcttgtggctgtcaccggaacttccaccgcaaagaaatcgacg |
139 |
Q |
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| T |
27508160 |
tgttgcgagtttattgctgccggtgaagaaggaacacttgaagctgttatttgcgccgcttgtaactgtcaccggaacttccaccgcaaagagatcgatg |
27508259 |
T |
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| Q |
140 |
gtgaa |
144 |
Q |
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||||| |
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| T |
27508260 |
gtgaa |
27508264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 24181178 - 24181213
Alignment:
| Q |
91 |
tgtgctgcttgtggctgtcaccggaacttccaccgc |
126 |
Q |
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| T |
24181178 |
tgtgctgcttgtggctgtcaccggaatttccaccgc |
24181213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 35192931 - 35192865
Alignment:
| Q |
79 |
gaagcggtgatttgtgctgcttgtggctgtcaccggaacttccaccgcaaagaaatcgacggtgaat |
145 |
Q |
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| T |
35192931 |
gaagctgttatttgcgccgcttgtaactgtcaccagaacttccaccgcaaagagatcgatggtgaat |
35192865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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