View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_35 (Length: 275)
Name: NF17188_low_35
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 32879591 - 32879406
Alignment:
| Q |
12 |
aaataatgatttgaaaaaggagaaagagaatatattttttcatgaaatttagttgaagccaaactaaatcatacatctatcgaaaatcagtacattatag |
111 |
Q |
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| T |
32879591 |
aaataatgatttgaaaaaggagaaagagaatatattttttcatgaaatttagttgaagccaaactaaatcatacatctatcgaaaatcagtacattatag |
32879492 |
T |
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| Q |
112 |
aactatagactgccttgctctacggatacattggtttgttccctcgttaggaacaagatcttcatccgaatttgaatacctaatagt |
198 |
Q |
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| T |
32879491 |
agagctctactgccttgctctacggatacattggttt-ttccctcattaggaacaagatcttcatccaaatttgaatacctaatagt |
32879406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 32882282 - 32882149
Alignment:
| Q |
126 |
ttgctctacggatacattggtttgttccctcgttaggaacaagatcttcatccgaatttgaatacctaatagttgtgttttaagtaattacaaagacatt |
225 |
Q |
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||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32882282 |
ttgctctacgg-tacattggtttgttccttcgttaggaacgagatcttcatccaaatttgaatacctaatagttgtgtttcaagtaattacaaagacatt |
32882184 |
T |
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| Q |
226 |
gtaccttttatatgagatgaattattcattatact |
260 |
Q |
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| T |
32882183 |
gtaccttttatatgagatgaattattcattatact |
32882149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32882456 - 32882356
Alignment:
| Q |
11 |
aaaataatgatttgaaaaaggagaaagagaatatattttttcatgaaatttagttgaagccaaactaaatcatacatctatcgaaaatcagtacattata |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32882456 |
aaaataatgatttgaaaaaggagaaagagaatatattttttcatgaaatttagttgaagccaaactaaatcatacatctatcgaaaatcagtacactata |
32882357 |
T |
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| Q |
111 |
g |
111 |
Q |
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| T |
32882356 |
g |
32882356 |
T |
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