View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_36 (Length: 262)
Name: NF17188_low_36
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_36 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 3424570 - 3424830
Alignment:
| Q |
13 |
agatgaagaatcgaagaaatttaagggccataacatcgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaaattgc |
112 |
Q |
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| T |
3424570 |
agatgaagaattgaagaaatttaagggccataacatcgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaaattgc |
3424669 |
T |
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| Q |
113 |
atggagttagcactaaaggttagaaaaatggcatac-------nnnnnnnnnntacatttagttaatattcattaggataatttaatttagattatattt |
205 |
Q |
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| T |
3424670 |
atggagttagcactaaaggttagaaaaatggcatacaaaaaaaataaaaaaaatacatttggttaatattcattaggataatttaatttagattatattt |
3424769 |
T |
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| Q |
206 |
gcatttaaat----ttaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaa |
262 |
Q |
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| T |
3424770 |
gcatttaaatttaattaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaa |
3424830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 11916844 - 11916591
Alignment:
| Q |
13 |
agatgaagaatcgaagaaatttaagggccataacat-----cgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaa |
107 |
Q |
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| T |
11916844 |
agatgaagaagctaagaaatttaagggccataacataacatcgatttcgacttctacatccttgtaaaaattaaagaagcaatggcagatgtttcctcaa |
11916745 |
T |
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| Q |
108 |
attgcatggagttagcactaaaggttagaaaaatggcatacnnnnnnnnnntacatttagttaatattcattaggataatttaatttagattatatttgc |
207 |
Q |
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| T |
11916744 |
attgcatagagttaacactaaaggttagaaaaatgtcata-tcaaaaaaaaaatatttggtaaatcttcattaggataatttaatttagattaaatttgc |
11916646 |
T |
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| Q |
208 |
atttaaatttaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaa |
262 |
Q |
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| T |
11916645 |
atttaaatttaatgcaggaaagacgcattaataataatagtgatgggaaaagaaa |
11916591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 35742493 - 35742444
Alignment:
| Q |
83 |
gaagcaatggtggatgtttcttcaaattgcatggagttagcactaaaggt |
132 |
Q |
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| T |
35742493 |
gaagcaatggtggatgtttcctccaattgcatggagttagtacttaaggt |
35742444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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