View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_37 (Length: 255)
Name: NF17188_low_37
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 23646382 - 23646142
Alignment:
| Q |
1 |
tattaattacaaaacattaacatgtagttatttttctagttattttttctctaagatagtacttttattaattaaaatgacactagcaatcattttacaa |
100 |
Q |
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| T |
23646382 |
tattaattacaaaacattaacatgtagttatttttctagttattttttctctaagatagtacttttattaattaaaatgacactagcaatcattttacaa |
23646283 |
T |
|
| Q |
101 |
tcatctttatgggaatttgaacttcatcgctcgagattacaagatcaaactcttaccacttaaagtttagatatgtaaacactgaatgaatagagtcgtg |
200 |
Q |
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| T |
23646282 |
tcatctttatgggaatttgaacttcatcggtcgagattacaagatcaagctcttaccatttaaagtttagatatgtaaacactgaatgaatagagtcgtg |
23646183 |
T |
|
| Q |
201 |
tggtagaagggaacccttggacaaaactcttctatcatatt |
241 |
Q |
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| T |
23646182 |
tagtagaagggaacccttggacaaaactcttctatcatatt |
23646142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 23614182 - 23613984
Alignment:
| Q |
43 |
ttttttctctaagatagtacttttattaattaaaatgacactagcaatcattttacaatcatctttatgggaatttgaacttcatcgctcgagattacaa |
142 |
Q |
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| T |
23614182 |
ttttttctctaagatagtacttttattaattaaaatgacactatcaatcattttacaatcatcttcatgggaatttgaacttcatcgctcgagattacaa |
23614083 |
T |
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| Q |
143 |
gatcaaactcttaccacttaaagtttagatatgtaaacactgaatgaatagagtcgtgtggtagaagggaacccttggacaaaactcttctatcatatt |
241 |
Q |
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| T |
23614082 |
gatcaagctcttaccacttaaagtttagatatgtaaacactgaatgaatagagtcgtagggtagaagggaacccttggacaaaactcttctatcatatt |
23613984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 23672316 - 23672171
Alignment:
| Q |
97 |
acaatcatctttatgggaatttgaacttcatcgctcgagattacaagatcaaactcttaccacttaaagtttagatatgtaaacactgaatgaatagagt |
196 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23672316 |
acaatcttctttatgcgaatttgaacttcatcgctcgagattacaagaccggcatcttaccacttaatgtttagatatgtaaacactgaatgaatagagt |
23672217 |
T |
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| Q |
197 |
cgtgtggtagaaggg-aacccttggacaaaactcttctatcatatt |
241 |
Q |
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| || |||||||||| ||||||||||||||||| |||| ||||||| |
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| T |
23672216 |
cttggggtagaagggaaacccttggacaaaacttttctctcatatt |
23672171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 23646417 - 23646383
Alignment:
| Q |
162 |
aaagtttagatatgtaaacactgaatgaatagagt |
196 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23646417 |
aaagtttagatatgtaaacactgaatgaatagagt |
23646383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 23614249 - 23614215
Alignment:
| Q |
162 |
aaagtttagatatgtaaacactgaatgaatagagt |
196 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
23614249 |
aaagtttagatatgtaaacattgaatgaatagagt |
23614215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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