View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_39 (Length: 250)
Name: NF17188_low_39
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35381525 - 35381289
Alignment:
| Q |
1 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35381525 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
35381426 |
T |
|
| Q |
101 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
35381425 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatggaactaagtgta |
35381326 |
T |
|
| Q |
201 |
gttaaatctgtcaagtggaccacatctggtgactcct |
237 |
Q |
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| T |
35381325 |
gttaaatgtgttaagtggaccacatctggtgactcct |
35381289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35370958 - 35370722
Alignment:
| Q |
1 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
100 |
Q |
| |
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||||||||| |||||||||||| |||||||||| ||||| | |||||||||||| ||||| ||||||| || |||||| |||||||||||| || |||| |
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| T |
35370958 |
atcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcataagcatagagaacat |
35370859 |
T |
|
| Q |
101 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagta |
200 |
Q |
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| T |
35370858 |
tgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaatgtt |
35370759 |
T |
|
| Q |
201 |
gttaaatctgtcaagtggaccacatctggtgactcct |
237 |
Q |
| |
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| T |
35370758 |
gttaaatgtgttaagtggaccacatctggtgactcct |
35370722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35355511 - 35355275
Alignment:
| Q |
1 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
100 |
Q |
| |
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||||||||| || ||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| || |||||| || ||||||||| || |||| |
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| T |
35355511 |
atcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcatagagaacat |
35355412 |
T |
|
| Q |
101 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagta |
200 |
Q |
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|||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| || ||| ||| ||| |
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| T |
35355411 |
tgtaaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgta |
35355312 |
T |
|
| Q |
201 |
gttaaatctgtcaagtggaccacatctggtgactcct |
237 |
Q |
| |
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| T |
35355311 |
gttaaatgtgttaagtggaccacatctggtgactcct |
35355275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 19685503 - 19685267
Alignment:
| Q |
1 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
100 |
Q |
| |
|
||||||||| ||||||||| || | ||||||||| ||||| | ||| |||||||| ||||| |||| || ||||||||| |||| ||||||| ||||||| |
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| T |
19685503 |
atcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaaaagcatagagcacat |
19685404 |
T |
|
| Q |
101 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagta |
200 |
Q |
| |
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|||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| |||||||| ||| || |
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| T |
19685403 |
tgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaagatggaatcaagtgtt |
19685304 |
T |
|
| Q |
201 |
gttaaatctgtcaagtggaccacatctggtgactcct |
237 |
Q |
| |
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||||||| ||| ||||| ||||||||||||||||||| |
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| T |
19685303 |
gttaaatgtgttaagtgcaccacatctggtgactcct |
19685267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19629148 - 19629384
Alignment:
| Q |
1 |
atcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacat |
100 |
Q |
| |
|
||||||||| ||||||||| || | ||||||||| ||||| ||| |||||||| |||| ||| | | ||||||||| |||| ||||||| |||||| |
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| T |
19629148 |
atcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcacaagcatagagcacaa |
19629247 |
T |
|
| Q |
101 |
tgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagta |
200 |
Q |
| |
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|||||| ||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||| |||| |||| |||| ||| ||| || |
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| T |
19629248 |
tgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaagatagaatcaagtgtt |
19629347 |
T |
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| Q |
201 |
gttaaatctgtcaagtggaccacatctggtgactcct |
237 |
Q |
| |
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||||||| ||| ||||| |||||||||||||| |||| |
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|
| T |
19629348 |
gttaaatgtgttaagtgcaccacatctggtgattcct |
19629384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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