View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_4 (Length: 674)
Name: NF17188_low_4
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_4 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 23180820 - 23181493
Alignment:
| Q |
1 |
ccttgatattatatcagggcgatcatgtgctttcaaattcatcgatcctagcactctttgtatttctggccagttgggattgcaagtaaatgtaatgaaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180820 |
ccttgatattatatcaggacgatcatgtgctttcaaattcattgatcctagcactctttgtatttctggccagttgggattgcaagtaaatgtaatgaaa |
23180919 |
T |
|
| Q |
101 |
aggtccggaaaaccaacatagctacaaattgccattccgtcaaaatataattgatccatgtatctacgacttcccacatgtgttgcaggtaatattactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180920 |
aggtccggaaaaccaacatagctacaaattgccattccgtcaaaatataattgatccatgtatctacgacttcccacatgtgttgcaggtaatattactc |
23181019 |
T |
|
| Q |
201 |
tttttcctttgtttgacccttgagtttgaatttggtgatcagtttcattcagactacgatacttagagactcgtagttttgattgatttttcctcagcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23181020 |
tttttcctttgtttgacccttgagtttgaatttggtgatcagtttcattcagactacgatacttagagactcgtagttttgattgatttttcctcagcca |
23181119 |
T |
|
| Q |
301 |
ttcgagtctttcagactccaacatggcgaatccatcaactaaaaactgttggtatagttttcttgaacataataaagtttggccttcctctgttctggat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23181120 |
ttcgagtctttcagactccaacatggcgaatccatcaactaaaaactgttggtatagttttcttgaacataataaagtttggccttcctctgttctggat |
23181219 |
T |
|
| Q |
401 |
tgaattctaaaagcaaaccattctcttacagtcagccaatttcttttattgctcttagaactttctctatctctatgagccacaccacgtcgatagccat |
500 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23181220 |
tgaattctaaaagctaaccattctcttatagtcagccaatttcttttattgctcttagaactttctctatctctatgagccacaccacgtcgatagccat |
23181319 |
T |
|
| Q |
501 |
cctcgccataaggaaatattaagggatattggtaagccaggtagcttgcatgaaattcatctattctttgaagtttgcgacgttgagtctctattattat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23181320 |
cctcgccataaggaaatattaagggatattggtaagccaggtagcttgcatgaaattcatctattctttgaagtttgccacgttgagtctctattattat |
23181419 |
T |
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| Q |
601 |
atctctttttgaagcagtgtcaacatcaccaacaataagagcagctacctcagacacagtgggttgattgttaa |
674 |
Q |
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| T |
23181420 |
atctctttttgaagcagtgtcaacatcaccaacaataagagcagctacctcagacacagtgggttgattgttaa |
23181493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 21904186 - 21904248
Alignment:
| Q |
55 |
tctttgtatttctggccagttgggattgcaagtaaatgtaatgaaaaggtccggaaaaccaac |
117 |
Q |
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|||||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||| |
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| T |
21904186 |
tctttgaatttctggccagtttggattgcaagtaaaagttatgaacagatctggaaatccaac |
21904248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 612
Target Start/End: Complemental strand, 30962407 - 30962288
Alignment:
| Q |
493 |
atagccatcctcgccataaggaaatattaagggatattggtaagccaggtagcttgcatgaaattcatctattctttgaagtttgcgacgttgagtctct |
592 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||||||| | | ||| ||||| | |||||||||||||||||||| | || |||||||| |
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| T |
30962407 |
atagccatcctcgccataagaaaatagtaacggatattggtaatgtcgatgtctttcatgacactcatctattctttgaagtttaccactttgagtctga |
30962308 |
T |
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| Q |
593 |
attattatatctctttttga |
612 |
Q |
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|| || |||||||||||||| |
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| T |
30962307 |
ataatcatatctctttttga |
30962288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 20537747 - 20537809
Alignment:
| Q |
55 |
tctttgtatttctggccagttgggattgcaagtaaatgtaatgaaaaggtccggaaaaccaac |
117 |
Q |
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| T |
20537747 |
tctttgaatttctggccagtttggattgcaagtaaaagttatgaacagatctggaaatccaac |
20537809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 596 - 671
Target Start/End: Original strand, 19293667 - 19293742
Alignment:
| Q |
596 |
attatatctctttttgaagcagtgtcaacatcaccaacaataagagcagctacctcagacacagtgggttgattgt |
671 |
Q |
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|||||||||||||||| |||| || ||||||||||||||||||||||| || || || ||||| |||||||||| |
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| T |
19293667 |
attatatctctttttggagcataatcgacatcaccaacaataagagcagcaacttcggaaacagttggttgattgt |
19293742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 117265 - 117367
Alignment:
| Q |
56 |
ctttgtatttctggccagttgggattgcaagtaaatgtaatgaaaaggtccggaaaaccaacatagctacaaattgccattccgtcaaaatataattgat |
155 |
Q |
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||||| |||||||||||||| ||||||||||| ||||| || || | |||||||||||||||| |||| | || ||||| | |||||||| || |||| |
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| T |
117265 |
ctttgaatttctggccagttaggattgcaagtgaatgttataaatatatccggaaaaccaacattgctagatatagccatatcatcaaaatacaactgat |
117364 |
T |
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| Q |
156 |
cca |
158 |
Q |
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||| |
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| T |
117365 |
cca |
117367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 570
Target Start/End: Original strand, 152823 - 152902
Alignment:
| Q |
491 |
cgatagccatcctcgccataaggaaatattaagggatattggtaagccaggtagcttgcatgaaattcatctattctttg |
570 |
Q |
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| T |
152823 |
cgatatccatcctcaccatatggaaaaatgagaggatattggaaactcaagtaacttgcatgaaattcatctattctttg |
152902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 570
Target Start/End: Original strand, 18065152 - 18065231
Alignment:
| Q |
491 |
cgatagccatcctcgccataaggaaatattaagggatattggtaagccaggtagcttgcatgaaattcatctattctttg |
570 |
Q |
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||||| |||||||| ||||| ||||| || | ||||||||| || || ||| |||||||||||||||||||||||||| |
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| T |
18065152 |
cgatatccatcctcaccatatggaaaaatgagaggatattggaaactcaagtaacttgcatgaaattcatctattctttg |
18065231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 5920 - 5874
Alignment:
| Q |
524 |
ggatattggtaagccaggtagcttgcatgaaattcatctattctttg |
570 |
Q |
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| T |
5920 |
ggatattggtaagcaagatagctagcatgaaattcatcaattctttg |
5874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 4261216 - 4261278
Alignment:
| Q |
55 |
tctttgtatttctggccagttgggattgcaagtaaatgtaatgaaaaggtccggaaaaccaac |
117 |
Q |
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|||||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||| |
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| T |
4261216 |
tctttgaatttctggccagtttggattgcaagtaaaagttatgaacagatctggaaatccaac |
4261278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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