View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_40 (Length: 247)
Name: NF17188_low_40
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 52396031 - 52395903
Alignment:
| Q |
107 |
aaaattaattttgttaaaaagttgatttaacataaaatgattcatatttatagggagctatgaatgtttggttcctcttttacagatgttgaattgattt |
206 |
Q |
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| T |
52396031 |
aaaattaattttgttaaaaagttgatttaacataaaatgatccatatttatagggagctatgaatgtctggttcctcttttacagatgttgaattgattt |
52395932 |
T |
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| Q |
207 |
ttgacatgtttgttgttctcgattagaat |
235 |
Q |
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| T |
52395931 |
ttgacatgtttgttgttctcgattagaat |
52395903 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 52396079 - 52396050
Alignment:
| Q |
1 |
gttatcattgcatacatatttataatcttg |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52396079 |
gttatcattgcatacatatttataatcttg |
52396050 |
T |
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