View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_41 (Length: 245)
Name: NF17188_low_41
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 6604685 - 6604876
Alignment:
| Q |
34 |
taggaatggtaagacacaattccatgatcaactggtttgatcttagtcttatctgaaaagttgaggcaatatataatgtttgtcatgacttcttgtattt |
133 |
Q |
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| T |
6604685 |
taggagtggtaagacacaattccatgatcaactggtttgatcttagtcttatctgaaaagttgag-caatatatcatgtta-tcatgacttcttgtattt |
6604782 |
T |
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| Q |
134 |
cattgataccgacttgaaaa-ttatacttgataaagacagcctcttctttcaaagaaagttcaaacttgataaaaagttcgtttccagccattg |
226 |
Q |
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| T |
6604783 |
cattgatactgactcgaaaaattatatttgataaagacagcctcttctttcaaagaaagttcaaacttgttaaaaagttcgtttccagccattg |
6604876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 14259450 - 14259270
Alignment:
| Q |
34 |
taggaatggtaagacacaattccatgatcaactggtttgatcttagtcttatctgaaaagttgaggcaatatata----atgtttgtcatgacttcttgt |
129 |
Q |
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| T |
14259450 |
taggaataataaggcacaattccatgatca-caggtttgatcttagtcttatctctaaagttcagacaaaatctttgcgatgtt-gtaatgacttcttgt |
14259353 |
T |
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| Q |
130 |
atttcattgataccgacttgaaaattatacttgataaagacagcctcttctttcaaagaaagttcaaacttgataaaaagttc |
212 |
Q |
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| T |
14259352 |
atttcattgataacgactcgaaaattatacatgataaaaacagcttcttctttcaaagaaaatttgaacttgttgaaaagttc |
14259270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 21429773 - 21429622
Alignment:
| Q |
43 |
taagacacaattccatgatcaactggtttgatcttagtcttatctgaaaagttgaggcaatatataa----tgtttgtcatgacttcttgtatttcattg |
138 |
Q |
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| T |
21429773 |
taaggcacaatttcatgatcaactggtctgatcttagtcttatttgtaaagttgagacaatatcaaagcgatgtt-gtcatgacttcttgtatttcgttg |
21429675 |
T |
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| Q |
139 |
ataccgacttgaaaattatacttgataaagacagcctcttctttcaaagaaag |
191 |
Q |
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| T |
21429674 |
ataatgaatcgaaaattatacatgatatagacaacctcttctttcaaacaaag |
21429622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 18156779 - 18156677
Alignment:
| Q |
112 |
tttgtcatgacttcttgtatttcattgataccgacttgaaaattatacttgataaagacagcctcttctttcaaagaaagttcaaacttgataaaaagtt |
211 |
Q |
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|||||||||||||||||||||||| | |||| |||||||||| ||||| ||||| | |||||||||||||||||| |||||| ||||| ||| |
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| T |
18156779 |
tttgtcatgacttcttgtatttcaatt-----gactctaaaattatacatgatatagacaacgtcttctttcaaagaaagtatgaacttgttaaaaggtt |
18156685 |
T |
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| Q |
212 |
cgtttcca |
219 |
Q |
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|| ||||| |
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| T |
18156684 |
cgcttcca |
18156677 |
T |
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