View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_43 (Length: 235)
Name: NF17188_low_43
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 24614965 - 24615172
Alignment:
| Q |
13 |
aagaatatctcgatttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaa |
112 |
Q |
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| T |
24614965 |
aagaatatctcgatttaagaaatttgtattaatatgtaacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaa |
24615064 |
T |
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| Q |
113 |
tatagaaagttaagtaccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt---tttct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
24615065 |
tatagaaagttaagtaccaattctgcaggcttctttattaaattgctttattcttcagtcttactaaattttgtggatttgttaatgctgttatgtttct |
24615164 |
T |
|
| Q |
210 |
gtcctatt |
217 |
Q |
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|||||||| |
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| T |
24615165 |
gtcctatt |
24615172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 24108684 - 24108509
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaacta-atgttcacatctttttgatgtttgtttcatagtttaatatagaaagtta |
124 |
Q |
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||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
24108684 |
tttaagaaattcgtatcaatatgtgacatttcattgtctgtcgaaaactatatgttcacatctttttgatgtttgtttcatcatttaatataaaaagtta |
24108585 |
T |
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| Q |
125 |
agtaccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt |
204 |
Q |
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| T |
24108584 |
agtaccaactctgcatacttctttattaaattgctttaatcttctgt----ctaaattgtgtggatttcttaatgctgtt |
24108509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24116395 - 24116258
Alignment:
| Q |
25 |
atttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagtta |
124 |
Q |
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|||||||||||||||| |||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||||| || ||||||||||||| || | |
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| T |
24116395 |
atttaagaaatttgtatcaatatgtgacatttcattgtctatcgaaaaccattgttcacatcttgttgatgtttgttttatcgtttaatatagaatgtaa |
24116296 |
T |
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| Q |
125 |
agtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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| T |
24116295 |
actaccaattctgcaagcttcattattaaattgcttta |
24116258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23693539 - 23693671
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
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||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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| T |
23693539 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23693638 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
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||||| ||| ||||||||||||||||||||||| |
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| T |
23693639 |
gtacccgttc----ggcttctttattaaattgcttta |
23693671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23711979 - 23712111
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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| T |
23711979 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23712078 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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||||| ||| ||||||||||||||||||||||| |
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| T |
23712079 |
gtacccgttc----ggcttctttattaaattgcttta |
23712111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23730435 - 23730567
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
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||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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| T |
23730435 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23730534 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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||||| ||| ||||||||||||||||||||||| |
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| T |
23730535 |
gtacccgttc----ggcttctttattaaattgcttta |
23730567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23748890 - 23749022
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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| T |
23748890 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23748989 |
T |
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| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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||||| ||| ||||||||||||||||||||||| |
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| T |
23748990 |
gtacccgttc----ggcttctttattaaattgcttta |
23749022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 23690136 - 23690187
Alignment:
| Q |
111 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
23690136 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
23690187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 24062373 - 24062424
Alignment:
| Q |
111 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
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|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
24062373 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
24062424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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