View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_44 (Length: 230)
Name: NF17188_low_44
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11106189 - 11106399
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11106189 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgtggaggagcttggacacagaagctcta |
11106288 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11106289 |
ccagttgctttcaaatccttcgcctatcggtcgccttggaatatctgttgaaggtccttatggacctgcttctaccaattatctaaggtctctacatctt |
11106388 |
T |
|
| Q |
201 |
aataaattaaa |
211 |
Q |
| |
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|| |||||||| |
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| T |
11106389 |
aaaaaattaaa |
11106399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11592411 - 11592621
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
11592411 |
tgcaatggcatccatttactgttacttctaacagtaaattggaaccagaaaagccaagtgttgtcattaaatgtggaggaaattggacacagaagctcta |
11592510 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
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|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592511 |
ccagttgctttcaaatcctttgcctatcggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
11592610 |
T |
|
| Q |
201 |
aataaattaaa |
211 |
Q |
| |
|
|| |||||||| |
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| T |
11592611 |
aaaaaattaaa |
11592621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11119339 - 11119549
Alignment:
| Q |
1 |
tgcaatggcatccatttaccgttacttctaatagtaaattggagccggaaaagctaagtgttgtcattaaatgcggaggagcttggacacagaagctcta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| | | |||| |||||||| | |||||||| |
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| T |
11119339 |
tgcaatggcatccatttaccattacttctaatagtaaattggaatctgaaaagctaagtgttgtcattaaaagtgaaggaacttggacaaaaaagctcta |
11119438 |
T |
|
| Q |
101 |
ccagttgctttcaaatccttcgcctataggtcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
200 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119439 |
ccagttgctttcaaatccttcgcctatcgatcgccttggaatatctgttgaaggtccttatggacctgcttcaaccaattatctaaggtctctacatctt |
11119538 |
T |
|
| Q |
201 |
aataaattaaa |
211 |
Q |
| |
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|| |||||||| |
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|
| T |
11119539 |
aaaaaattaaa |
11119549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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