View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_48 (Length: 211)
Name: NF17188_low_48
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 45500 - 45325
Alignment:
| Q |
17 |
caaagggaggtttcaaattggcaagctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtg |
116 |
Q |
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| T |
45500 |
caaagggaggtttcaaattggcaggctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtg |
45401 |
T |
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| Q |
117 |
agactgaattaaactcctcaacaaagtgttggcgttatacatttagagtcgccagtatggtcaagaccaacctact |
192 |
Q |
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| T |
45400 |
agactgaattaaactcctcaacaaagtgttggctttatacatttagagtcgccagtatggtcaagaccaacctact |
45325 |
T |
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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 21358933 - 21358796
Alignment:
| Q |
27 |
tttcaaattggcaagctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtgagactgaatt |
126 |
Q |
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| T |
21358933 |
tttcaaattggctggctgtttctcaaaaattcaaatcaaacataaaaatggattttgatagacatttaggctttgtaaactgcaactgtgatactcaatg |
21358834 |
T |
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| Q |
127 |
aaactcctcaacaaagtgttggcgttatacatttagag |
164 |
Q |
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| T |
21358833 |
aaactccttaacaaagtgttggctttaaacatttagag |
21358796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 18382950 - 18383024
Alignment:
| Q |
28 |
ttcaaattggcaagctatttctcagaaattcaaatcaaacat-caaaatggaattcaataagcatttaggcttta |
101 |
Q |
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| T |
18382950 |
ttcaaattggtaggctcttgctcagaaattcataccaaaccttcaaaatgaaattcaataaacatttaggcttta |
18383024 |
T |
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