View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_low_5 (Length: 660)
Name: NF17188_low_5
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 653
Target Start/End: Original strand, 24136573 - 24137224
Alignment:
| Q |
1 |
ggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24136573 |
ggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccagcacatgtgct |
24136672 |
T |
|
| Q |
101 |
taaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24136673 |
taaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttagcctaac |
24136772 |
T |
|
| Q |
201 |
ccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgat |
300 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24136773 |
cagcaataattgcttcccaagatgcacaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgat |
24136872 |
T |
|
| Q |
301 |
catggtttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacat |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24136873 |
catggtttccaggaacctacattctgacaaggcattacctcatacaattccctt-ccatatccattttcttgttttgcacatatcatgcaatcatcacat |
24136971 |
T |
|
| Q |
401 |
tgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatctgcaaacaccattgttgtgaacgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
24136972 |
tgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgtccacgt |
24137071 |
T |
|
| Q |
501 |
gaaaacaccccgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatccgggccataaccgaaaatcatagtattccaagaaattaca |
600 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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|
| T |
24137072 |
gaaaacaccctgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatctgggccataaccgaaaattatggtattccaagaaattaca |
24137171 |
T |
|
| Q |
601 |
tccctaacaagcacatgatcaaaaagtctaatagcatcacccaacatcttcct |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24137172 |
tccctaacaagcacatgatcaaaaagtctaatagcatcacccaacatcttcct |
24137224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 653
Target Start/End: Original strand, 24134259 - 24134913
Alignment:
| Q |
1 |
ggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgct |
100 |
Q |
| |
|
||||||||| ||||||||||||||| | | |||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
24134259 |
ggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccataccagcacatgtgct |
24134358 |
T |
|
| Q |
101 |
taaagca-aacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaa |
199 |
Q |
| |
|
||| | ||||||| ||| ||||| |||| ||| | | |||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||| |
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|
| T |
24134359 |
caaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgaccagtctgagcctaa |
24134458 |
T |
|
| Q |
200 |
cccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttga |
299 |
Q |
| |
|
|| |||||||||| |||||||| | |||||||| | ||||||||||||||||||||| | | |||||||||||| | | |||||| |||||||||||| |
|
|
| T |
24134459 |
ccaccaataattgccacccaagatacacaatcgcggttagccatcatgtcaaacaatttgccaacttgagcaatatttcctttctgatcatagccgttga |
24134558 |
T |
|
| Q |
300 |
tcatggt-ttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcac |
398 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||| || || |||||| |
|
|
| T |
24134559 |
tcatggtattccacgaacctacattccaacatggcattgcctcaaacaattcccttgccatatccatttgcttgtattgcacatttcccttaaccatcac |
24134658 |
T |
|
| Q |
399 |
attgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatctgcaaacaccattgttgtgaac |
498 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||| |||||||| ||||||||| || |
|
|
| T |
24134659 |
attgtatgtcatctttcattttcccggcatttcatcgaaaactcttctcgcatgatccaacattccactctgcacatatgcaaacatcattgttgtccac |
24134758 |
T |
|
| Q |
499 |
gtgaaaacaccccgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatccgggccataaccgaaaatcatagtattccaagaaatta |
598 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| | ||||||| ||||| ||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
24134759 |
ctgaaaacatcccgcaccggagactcctcaaacaatctcctagcttgtaacaaatatccattcggtgcatatccgaaaatcagggtattccaagaaatta |
24134858 |
T |
|
| Q |
599 |
catccctaacaagcacatgatcaaaaagtctaatagcatcacccaacatcttcct |
653 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
24134859 |
catccctaacaagcatatgatcaaaaaatctcctagcatcacccaacatcctcct |
24134913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
56 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
154 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
155 |
accagcatgtccatagcttattcatagtgaccagtct |
191 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 36 - 653
Target Start/End: Complemental strand, 45149295 - 45148676
Alignment:
| Q |
36 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
134 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
|
|
| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
135 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
|
| Q |
235 |
ttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggc |
333 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45149095 |
ctgagtcatcatgtcaaacaattccctagcttgagcaatatctccgttctgaccatagccgctgataatggtattccatgaacctacattccgacaaggc |
45148996 |
T |
|
| Q |
334 |
attgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatgtcatctttctttttcccggcatttcat |
433 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
45148995 |
attgcctcaaacaattcccttgccatatccattttcttgtattgcacatatcctgcaatcatcacattgtatgccatctctctttttcccggcatttcat |
45148896 |
T |
|
| Q |
434 |
cgaaaactcctctcgcttcatccaacattccactatgcacatctgcaaacaccattgttgtgaacgtgaaaacaccccgcaccggagactcctcaaacaa |
533 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45148895 |
cgaaaactcttctcgcttcatccaacattccactctgcacatatgcaaacaccattgctgtccacgtgaaaacatcccgcaccggagactcctcaaacaa |
45148796 |
T |
|
| Q |
534 |
tctcccagctagaaacaaatctccatccgggccataaccgaaaatcatagtattccaagaaattacatccctaacaagcacatgatcaaaaagtctaata |
633 |
Q |
| |
|
|||| ||| | ||||||||||||||| || |||||||| ||||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||||||| || |
|
|
| T |
45148795 |
cctcctggcttgtaacaaatctccatcccgggcataaccggaaatcatggtattccaagagattgcattcctaacaggcatatgatcaaaaagtctccta |
45148696 |
T |
|
| Q |
634 |
gcatcacccaacatcttcct |
653 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45148695 |
gcatcacccaacatcttcct |
45148676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 37 - 406
Target Start/End: Complemental strand, 45165655 - 45165284
Alignment:
| Q |
37 |
tcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaattttt |
135 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||| ||| |||||||||| ||| || |||||||||| |||||| ||| || |||| ||||||||| ||| |
|
|
| T |
45165655 |
tcttcaccgcctgcccatgaatttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc |
45165556 |
T |
|
| Q |
136 |
gtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgt |
235 |
Q |
| |
|
|||| ||| |||| || | ||||| || ||||| |||||||||||| ||| | | ||||| |||||||| || |||||||| | || || || |
|
|
| T |
45165555 |
tccgtcttgttttatctctacaaacatgttcagagcttcttcatagtgaccgctctgagcataaccagcaataatagccgcccaagatacacagtcacgc |
45165456 |
T |
|
| Q |
236 |
tgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggca |
334 |
Q |
| |
|
|| | |||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||||| | |||||||| ||||| |||| || ||||||||| |||| |
|
|
| T |
45165455 |
tgtggcatcatatcaaagaattttctagcctgagcaatgtctccaatctgaccatagcctgtaatcatggtattccatgaacttatattccgacagggca |
45165356 |
T |
|
| Q |
335 |
ttgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatg |
406 |
Q |
| |
|
| | |||| |||| |||||||| || ||||||||||| |||||||||| | |||||||| ||||||||| |
|
|
| T |
45165355 |
tagactcaaacaactcccttgcgatgtccattttcttagtttgcacataacccgcaatcattgcattgtatg |
45165284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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