View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_low_6 (Length: 657)
Name: NF17188_low_6
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Original strand, 21915426 - 21916055
Alignment:
| Q |
13 |
aatatcctggctaataaaagtgggtaaaacatcccaccagaaactacttatgacaccatgtccgtgattatccaacttatctgtacaactgtttacttca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21915426 |
aatatcctggctaataaaagtgggtaaaacatcacaccagaaactactcgtgacaccatatccatgattagccaacttatctgtacaactgtttacttca |
21915525 |
T |
|
| Q |
113 |
cgataaatatgcaaagaaaggatcaatacaccaacgttcgtacaattatgccactgattgcgcaaagcaaaaggatccaaagaagagttctaaaaaaccc |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
21915526 |
cgataaatatgcgaagaaaggatcaatacaccaacgttcatacaattatgccactgattgcgcaaagcaaaaggaaccagagaagagttctaaaaaaccc |
21915625 |
T |
|
| Q |
213 |
tcagagcactctgagaattcccctcgatccaaagatacttctaacgatgcctgattccatattcaagagcgaacataaagccatagagctccgcttcaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21915626 |
tcagagcactctgagaattcccctcgatccaaagatacttctaacgatgcctgattccatattcaagcgcgaacataaagccatagagctccgcttcaaa |
21915725 |
T |
|
| Q |
313 |
gatcgtgcaagcatgcaatttacaatccaggaatgagcctctataatcacaaaa-----atacaaccacactcagctgactcaccaataacataactata |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21915726 |
gattgtgcaagcatgcaatttacaatccaggaatgagcctctataatcacaaaaaatatataccaccacacgcagctgactcaccaataacataactata |
21915825 |
T |
|
| Q |
408 |
tgtgtttaccttcacataaggcaaggttggcgccttccatgtgacagtaacaatagcagcaaaatttatttggtgaggagaagccatgaaagcttcaagc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21915826 |
tgtgtttaccttcacataaggcaaggttggcgccttccatgtgacagtaacaatagcagcaaaatttatttggtgaggagaagccatgaaagcttcaagc |
21915925 |
T |
|
| Q |
508 |
atatgagaatcaaaagctataggtaagcacttcccagaagataaattacttgacaaagcatcggaagaaagaannnnnnnnctttggctccattcaggga |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
21915926 |
atatgagaatcaaaagctataggtaagcacttcccagaagataaattacttgacaaagcatcggaagaaagaa-tttttttctttggctccatgcaggga |
21916024 |
T |
|
| Q |
608 |
cggacctgtt-aaggtcctggtgtggcaagt |
637 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
21916025 |
cggacctgttaaaggtcctggtgtggcaagt |
21916055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 19091923 - 19092109
Alignment:
| Q |
16 |
atcctggctaataaaagtgggtaaaacatcccaccagaaactacttatgacaccatgtccgtgattatccaacttatctgtacaactgtttacttcacga |
115 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| | || ||||| |||| || || ||| ||||||||| | ||||| ||| | ||| || |
|
|
| T |
19091923 |
atcctggctaataaaagcgagtaaaacatcccaccagaaaaaatttgtgacatcatgcccatggttagtcaacttatcagaacaaccgttaccctcatga |
19092022 |
T |
|
| Q |
116 |
taaatatgcaaagaaaggatcaatacaccaacgttcgtacaattatgccactgattgcgcaaagcaaaaggatccaaagaagagttc |
202 |
Q |
| |
|
|| ||||| |||| | |||| | | |||| | ||| |||||| |||||| |||||||||||| |||| | ||||||||| |||| |
|
|
| T |
19092023 |
tagatatgggaagacaagatcgagataccagcattcacacaattgtgccaccgattgcgcaaagaaaaaataaccaaagaagtgttc |
19092109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 638
Target Start/End: Original strand, 4136922 - 4136958
Alignment:
| Q |
602 |
cagggacggacctgttaaggtcctggtgtggcaagtg |
638 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4136922 |
caggggcggacctgttaaggtcctggtgtggcaagtg |
4136958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University