View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_7 (Length: 625)
Name: NF17188_low_7
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 17 - 610
Target Start/End: Original strand, 24478939 - 24479532
Alignment:
| Q |
17 |
taggtccaatgggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttcctcagttgagct |
116 |
Q |
| |
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|||||||||||||||||| |||||| ||| || |||||| ||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||| |
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| T |
24478939 |
taggtccaatgggaataataggtcttggaatatgattacatctagcagttaaaaaattgtcgaatgatcgaacaagttccatgtcttcctcagttgagct |
24479038 |
T |
|
| Q |
117 |
taacggaagtgagatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttg |
216 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479039 |
taacggaagtgaggtcttaccaccggtaagatctctatcatccactgacttcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttg |
24479138 |
T |
|
| Q |
217 |
gttggtaaggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttgg |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479139 |
gttggtaaggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttgg |
24479238 |
T |
|
| Q |
317 |
attcactcaggtgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataa |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479239 |
attcactcaggtgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataa |
24479338 |
T |
|
| Q |
417 |
actcctctgtgtttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactgtcatatatataacgatca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479339 |
actcctctgtgtttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactgtcatatatataacgatca |
24479438 |
T |
|
| Q |
517 |
aatttcctcttctgaaataaaaaattgactctattataaataaaactacatgtaagagagatataccttaattataaaggtgttagaatctctt |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479439 |
aatttcctcttctgaaataaaaaattgactctattataaataaaactacatgtaagagagatataccttaattataaaggtgttagaatctctt |
24479532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 24694157 - 24693804
Alignment:
| Q |
17 |
taggtccaatgggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttc---ctcagttga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24694157 |
taggtccaatgggaataacgggtcttagtagatgattacacctaggagttaaaaaattgttgagtgagcaaacaagttccatgtcttcttcctcagttga |
24694058 |
T |
|
| Q |
114 |
gcttaacggaagtgagatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgat |
213 |
Q |
| |
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|||||| |||||||| ||||||| | |||| || | ||||| ||| ||||| ||||||||| ||||||| ||| ||||||||||| |||||||||| | |
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| T |
24694057 |
acttaactgaagtgaggtcttaccatcagtaaaatatttatcacccattgacttcaatgctttcacaaagtatatatttggtttatcatttaatgatggt |
24693958 |
T |
|
| Q |
214 |
ttggttggtaaggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctt |
313 |
Q |
| |
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||||| ||||||||||||| || ||| ||| ||||||| ||||| ||| |||||||||||||| | | |||| | |||| |||||||||||||||| |
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| T |
24693957 |
ttggtactgaaggagaaactattaccaaccattaaatctctaggttggttttccaagctcccttgatgcatagggtaactcaaaaccttaatagaatctt |
24693858 |
T |
|
| Q |
314 |
tggattcactcaggtgagaatagtcttctgtacaagtagcacaatattctcctt |
367 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
24693857 |
cagattcactcaggtgagaatagtcttctgtacaggtttcacaatattctcctt |
24693804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 540
Target Start/End: Complemental strand, 24693698 - 24693457
Alignment:
| Q |
299 |
ccttaatagaatctttggattcactcaggtgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatt |
398 |
Q |
| |
|
||||||||||||| |||| |||| | || |||| | ||||| ||||| || |||||| ||||||||||||||||||||||| |||||||| ||| || |
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| T |
24693698 |
ccttaatagaatcattggggtcacataagtaagaacaatcttccatacaaataccacaatgttctccttcatcatctagagtagcaaaaataaactcctt |
24693599 |
T |
|
| Q |
399 |
tgcttcttgtgaaaataaactcctctgtgtttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactg |
498 |
Q |
| |
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|||| |||||||||||||| | | || | |||||| || |||||| |||||||||||||||| || || |||||| ||||||||||||||| || | |
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| T |
24693598 |
tgctcgttgtgaaaataaacacttttgcgcctgatctctgacctttttactaccatatttttctttatctaagagttttaaactagtagtgaatgtaccg |
24693499 |
T |
|
| Q |
499 |
tcatatatataacgatcaaatttcctcttctgaaataaaaaa |
540 |
Q |
| |
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|| |||||||| || || |||||||||||||||||||||||| |
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| T |
24693498 |
tcgtatatataccggtccaatttcctcttctgaaataaaaaa |
24693457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 41369449 - 41369821
Alignment:
| Q |
17 |
taggtccaatgggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttcctcagttgagct |
116 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||| || |||| ||||||||||||| ||||| |||||| |||||||||||||||||||| || |
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| T |
41369449 |
taggtccaatgggaataattggtcttggaagatgattatccctggcaggtaaaaaattgttgcgtgagcgaacaagatccatgtcttcctcagttgaact |
41369548 |
T |
|
| Q |
117 |
taacggaagtgagatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttg |
216 |
Q |
| |
|
||||||||||||| | | ||| |||||||||||||||||||| | | | ||||||| |||||||| |||||| ||||||| |||||||||| | || |
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| T |
41369549 |
taacggaagtgaggtttcaccattggtaagatctctatcatccattaagtttaatgcttccacaaagtcaattttttgtttatcatttaatgatggtatg |
41369648 |
T |
|
| Q |
217 |
gttggtaaggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttgg |
316 |
Q |
| |
|
|| | ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||| | |
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| T |
41369649 |
gtgcctgaggagaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaatcttccg |
41369748 |
T |
|
| Q |
317 |
attcactcaggtgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaat |
389 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||| ||||||||| ||| | || ||||| ||||||||| |
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|
| T |
41369749 |
attcgctcaggtgagaatagtcttccatacaggtagcgcaatattcttctttgttatttagagcaggaaaaat |
41369821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 245 - 427
Target Start/End: Original strand, 41369851 - 41370033
Alignment:
| Q |
245 |
ttttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactcaggtgagaatagtcttctgt |
344 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| | |||||| | | || |||||| |||||| |||| | ||| |||| |||| ||||||| | |
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|
| T |
41369851 |
ttttatctctagcttggattttcatgctcctttgattcatggggtaacttgaccccttaacagaatcattggggtaactgaggtaagaacagtcttccat |
41369950 |
T |
|
| Q |
345 |
acaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataaactcctctgtg |
427 |
Q |
| |
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|||| || |||| |||||| |||| | |||||||||||||| ||||| ||| |||| | ||||| ||||||||||||| |||| |
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| T |
41369951 |
acaaataccacagtattctacttcgttatctagagtaggaagaataaactcctttgttccttgtaaaaataaactcctttgtg |
41370033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 565
Target Start/End: Original strand, 41370051 - 41370102
Alignment:
| Q |
514 |
tcaaatttcctcttctgaaataaaaaattgactctattataaataaaactac |
565 |
Q |
| |
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||||||||||| ||||||||| |||| ||||||||||||| || |||||||| |
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|
| T |
41370051 |
tcaaatttccttttctgaaattaaaatttgactctattattaacaaaactac |
41370102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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