View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_low_8 (Length: 571)
Name: NF17188_low_8
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 571
Target Start/End: Original strand, 1389556 - 1390105
Alignment:
| Q |
10 |
aagaaaatctaatatgtagtgtttttnnnnnnntaaaattaattctagaatatcaattatacactaatgggatgtttttagatgaaaaattttgtcaaaa |
109 |
Q |
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| T |
1389556 |
aagaaaatctaatatgtagtgtttttaaaaaaaaaatattaattctagaatatcaattatacactaatgggatgtttttagatgaaaaaatttgtcaaaa |
1389655 |
T |
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| Q |
110 |
tatcccagtcaattgtttcagagttaatagcagttttaccacatacaatacaacaagggtttaacatgttggaaaataaaggcatgagtcttgttgatgt |
209 |
Q |
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| T |
1389656 |
tatcccagtcaattgtttcagagttaatagcagttttaccacatgcaa-----caagggtttaacatgttggaa----------tgagtcttgttgatgt |
1389740 |
T |
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| Q |
210 |
caccactctaaggcattacataatgatttattttcaggttgaaaaattcgaatattataagcgtctgaaaatgttaatat--taagttgacaaggaatac |
307 |
Q |
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| T |
1389741 |
caccactctcaggcattacatattgatttattttcaggctgaaaaattcgaatattataagcgtctgaaaatgttaatatattaagttgacaaggaatac |
1389840 |
T |
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| Q |
308 |
caagcaataccgtgaagaaataatctccctaattcctagaaaaacaaagaacaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgt |
407 |
Q |
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| T |
1389841 |
catgcaataccgtgaagaaataatctccctaattcctagaaaaaccaagaagaatttgtagtaagtcaggaagaatcta---atggcagaatgaaagtgt |
1389937 |
T |
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| Q |
408 |
cataaagagtgaaagctaaacgtcatatataaaatccaaaaaagttgcatatcaatgtggtaagaattgcctcaac----aatactggaaaagatgaact |
503 |
Q |
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| T |
1389938 |
cataaagagtgaaagctaaacgtcatatataaaatccaacaaagttgcatatcaatgtggtaagaattgcctcaacaattaatactggaaaagatgaact |
1390037 |
T |
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| Q |
504 |
atcaagtaagagaaaaagaagggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatct |
571 |
Q |
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| T |
1390038 |
atcaagtaagagaaaaagaagggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatct |
1390105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 161 - 509
Target Start/End: Original strand, 4747164 - 4747500
Alignment:
| Q |
161 |
aacaagggtttaacatgttggaaaataaaggcatgagtcttgttgatgtcaccactctaaggcattacataatgatttattttcaggttgaaaaattcga |
260 |
Q |
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| T |
4747164 |
aacatgggcttaacatgttggaaaataaaggca-gagtcttggtgatggcaccactctcagccattacatg--gattgactctgaggttcaaaaattcaa |
4747260 |
T |
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| Q |
261 |
atattataagcgtctgaaaatgttaatattaagttgacaaggaatacc---aagcaataccgtgaagaaataatctccctaattcctagaaaaacaaaga |
357 |
Q |
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| T |
4747261 |
atattataagcgtcagaaaatgtgaatattaagttgacgagaaataccttgaggcaggaccgtgaagaaataatctccccaatccccagcaatacctaca |
4747360 |
T |
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| Q |
358 |
acaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagctaaacgtcatatataaaatccaaaaaagttgcat |
457 |
Q |
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| T |
4747361 |
acagttt---gcaagtcagtaagcatcta---atgggagaacaaaagtgtcataaagagtgaaagctagacgtcgt------aatccaacaaagttacgt |
4747448 |
T |
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| Q |
458 |
atcaatgtggtaagaattgcctcaacaatactggaaaagatgaactatcaag |
509 |
Q |
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| T |
4747449 |
attaatctagtaaaagttgcctaaaaaatactgggaaagttgaactatcaag |
4747500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 571
Target Start/End: Original strand, 4747667 - 4747714
Alignment:
| Q |
524 |
gggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatct |
571 |
Q |
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| T |
4747667 |
gggcagattgaagtaaaaagggagcccatgccatacacaatgcaatct |
4747714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 571
Target Start/End: Original strand, 4709644 - 4709685
Alignment:
| Q |
530 |
attgaagtaaaaagggagcctatgccatatacaatgcaatct |
571 |
Q |
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| T |
4709644 |
attgaagtaaaaagggagcccatgccatacacaatgcaatct |
4709685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 4709417 - 4709458
Alignment:
| Q |
390 |
atgggagaacgaaagtgtcataaagagtgaaagctaaacgtc |
431 |
Q |
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| T |
4709417 |
atgggagatcaaaagtgtcataaagagtgaaagctagacgtc |
4709458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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