View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_high_1 (Length: 540)
Name: NF17189_high_1
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 12418010 - 12418533
Alignment:
| Q |
1 |
aggacgaaagataagaaggactacttgattgaattttatatttcctaatttaggcctttcaattccctttgaatatttaaattaggaacccctaatccca |
100 |
Q |
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| T |
12418010 |
aggacgaaagataagaaggactacttgattgaattttatatttcctaatttaggcctttcaattccctttgaatatttaaattaggaacccctaatccca |
12418109 |
T |
|
| Q |
101 |
tattaggttcttaaactccatgccatgtactttttgacatagctatttaatcgaagttttaaaatctacatcttatactatataaggcagacaaggtaca |
200 |
Q |
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| T |
12418110 |
tattaggttcttaaactccatgccatgtactttttgacatagctatttaatcgaagttttaaaatctacatcttatactatataaggcagacaaggtaca |
12418209 |
T |
|
| Q |
201 |
ttcaattttaaacaaggcacacaaggtatcaaccacatgaataaaatatagctagcagccatataatctcaaacaccaatcaacaacacataataggaaa |
300 |
Q |
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| T |
12418210 |
ttcaatattaaacaaggcacacaaggtatcaaccacatgaataaaatatagctagcagccatataatctcaaacaccaatcaacaacacataataggaaa |
12418309 |
T |
|
| Q |
301 |
catcctaacatacatttgaatacatgcctgttttagcttatccaagacatcagtatagaaaaatgcatgattaattcaaatagaactggtttacaaaatt |
400 |
Q |
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| T |
12418310 |
catcctaacatacatttgaatacatgcctgttttagcttatccaagacatcagtatagaaaaatgcatgattaattcaaatagaactggtttacaaaatt |
12418409 |
T |
|
| Q |
401 |
ttcctgcagaaaaaatagaggaaattttaccatatttcaacctccaaaagacctttagattcaacaagtggta-nnnnnnnnnatgcataaaaacttgaa |
499 |
Q |
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| T |
12418410 |
ttcctgcagaaaaaatagaggaaattttaccata-ttgaacctccaaaagacctttagattcaacaagtggtattttttttttatgcataaaaacttgaa |
12418508 |
T |
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| Q |
500 |
tgcacatcagtcaatgtgggacttg |
524 |
Q |
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| T |
12418509 |
tgcacatcagtcaatgttggacttg |
12418533 |
T |
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