View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_high_11 (Length: 308)
Name: NF17189_high_11
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 14234034 - 14233746
Alignment:
| Q |
1 |
ccgggatgtatcccataaatacagtgcaattgattgttcaggccatgagtcaatttcattggagaataataactgaaggattccttaatgtttgtgtcgg |
100 |
Q |
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| T |
14234034 |
ccgggatgtatcccataaagacagtgcaattgattgttcaggccatgagtcaatttcattggagaataataactgaaggattccttaatgtttgtgtcgg |
14233935 |
T |
|
| Q |
101 |
acatctcttcatcactgacttgctaattgaaaataattnnnnnnnctacataaagatgttgataaaaattttacatttatgattaaataaaggttagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14233934 |
acatctcttcatcactgacttgctaattgaaaataattaaaaaaactacataaagatgttgataaaatttttacatttatgattaaataaaggttagaat |
14233835 |
T |
|
| Q |
201 |
tggtaagtgtcttacaacattgttgtcatcaccacccaatggagtctgatcattgatgtactcaatagcatgtacttcatcgttggcca |
289 |
Q |
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| T |
14233834 |
tggtaagtgtcttacaacattgttgtcatcaccacccaatggagtctaatcattgatgtactcaatagcatgtacttcatcgttggcca |
14233746 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 1617215 - 1617269
Alignment:
| Q |
7 |
tgtatcccataaatacagtgcaattgattgttcaggccatgagtcaatttcattg |
61 |
Q |
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|||||||||||||| | || ||||||||| | |||||||||||||||||||||| |
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| T |
1617215 |
tgtatcccataaatttaatgaaattgattggttaggccatgagtcaatttcattg |
1617269 |
T |
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