View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_high_12 (Length: 295)
Name: NF17189_high_12
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 21217052 - 21216790
Alignment:
| Q |
18 |
actatgatattatcatttagggtttatttgataaggtcaagaagttagcttataggatgaaagctcatctgacaaaaaattcatgtcaaatgctaataat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21217052 |
actatgatgttatcatttagggtttatttgataaggctaagaagttagcttataggatgaaagctcatctgacaaaaaattcatgtcaaatgctaataat |
21216953 |
T |
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| Q |
118 |
ggtccatttcttataaaccacccgaggccatcacaacaatcaatatttcccctgtactacgtgatgaatactccatctgannnnnnnngaagaatttcca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21216952 |
ggtccatttcttataaaccacccgaggccatcacaacaatcaatatttctcctgtactacgtgatgaatactccatctgattttttttgaagaatttcca |
21216853 |
T |
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| Q |
218 |
tcttcttttgttctgttgttattattatgttgatatttgataaattcggcgaccctccttcat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21216852 |
tcttcttttgttctgttgttattattatgttgatatttgataaattcggcgaccctccttcat |
21216790 |
T |
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