View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_high_8 (Length: 335)
Name: NF17189_high_8
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36289640 - 36289320
Alignment:
| Q |
1 |
ataaactttaggaaataaatattacctttgagttttcccttagacctacatagaagccatacaaagattccaaggcagataatccccgcgacaacaccta |
100 |
Q |
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| T |
36289640 |
ataaactttaggaaataaatattacctttgagttttcccttaaacctacatagaagccatacaaagattccaaggcagataatccccgcgacaacaccta |
36289541 |
T |
|
| Q |
101 |
atattatcccaattttggtctttttcttcccatcaactgtatttgaagacatatatatatttatgttatcattttcatgctaacattacaacctgacatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36289540 |
atattatcccaattttggtctttttcttcccatcacctgtatttgaagacatatatat--ttatgttatcattttcatgctaacattacaacctgacatc |
36289443 |
T |
|
| Q |
201 |
aaaactgggaaactaatgttaccaattaaaaataatgaatcttttctttacctaaatcagaatcagcaagacgaatgttgagtgtatttccttgattttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289442 |
aaaactgggaaactaatgttaccaattaaaaataatgaatcttttctttacctaaatcagaatcagcaagacgaatgttgagtgtatttccttgattttc |
36289343 |
T |
|
| Q |
301 |
taacctttgaacatcaactaact |
323 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
36289342 |
taacctttgaaaatcaactaact |
36289320 |
T |
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