View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_low_12 (Length: 315)
Name: NF17189_low_12
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 7681949 - 7682246
Alignment:
| Q |
3 |
gaaggagggtatttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaa |
102 |
Q |
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| T |
7681949 |
gaaggagggtatttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaa |
7682048 |
T |
|
| Q |
103 |
cattggtgattttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaac |
202 |
Q |
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| T |
7682049 |
cattggtgattttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaac |
7682148 |
T |
|
| Q |
203 |
attattgaggaacataaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgtcacttaaagaggaaacagatgaggatgg |
300 |
Q |
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| T |
7682149 |
attattgatgaacataaaacttctatttctaggagtgagaaacataaggatttgttgagtactttgttgtcacttaaagaggaaacatatgaggatgg |
7682246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 7621739 - 7621457
Alignment:
| Q |
11 |
gtatttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtg |
110 |
Q |
| |
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| T |
7621739 |
gtattcaatgatggcaatggtggttgtgaccctaaagctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagttttcaatataagtg |
7621640 |
T |
|
| Q |
111 |
attttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattga |
210 |
Q |
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| T |
7621639 |
attttattccatcattggaatggctagaccttcaaggagttcaagctaaaatgaagaaattacacaagaagtttgatgcatttttaacgaacattattga |
7621540 |
T |
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| Q |
211 |
ggaacataaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgtcacttaaagaggaaacagatg |
293 |
Q |
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| T |
7621539 |
tgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaaagaggaaacagatg |
7621457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 7662451 - 7662733
Alignment:
| Q |
11 |
gtatttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtg |
110 |
Q |
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| T |
7662451 |
gtattcaatgatggcaatggtggttgtgaccctaaggctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagttttcaatataagtg |
7662550 |
T |
|
| Q |
111 |
attttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattga |
210 |
Q |
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| T |
7662551 |
attttattccatcattggaatggctagaccttcaaggagttcaagctaaaatgaaaaaattacacaagaagtttgatgcatttttaacaaacattattga |
7662650 |
T |
|
| Q |
211 |
ggaacataaaacttctatttctaggagtgagaaacataaggatttattgagtactttgttgtcacttaaagaggaaacagatg |
293 |
Q |
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| T |
7662651 |
tgaacgtgaaaattcaaattttaagagtgagaaacataaggatttgttgagtactttgttgttacttaaagaagaaacggatg |
7662733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 7667566 - 7667814
Alignment:
| Q |
11 |
gtatttaatgaaggaaatggtgattttgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtg |
110 |
Q |
| |
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| T |
7667566 |
gtattcaatgatggcaatggtggttgtgaccctaaagctgatgagttcaaggaaatggttcttgaattgatggtgttagctggagtttttaatataagtg |
7667665 |
T |
|
| Q |
111 |
attttattccatcattggaatggctagaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattga |
210 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7667666 |
attttattccttcattagaatggctagaccttcaagaagttcaagctaaaatgaaaaaattacacaaacaatttgatgcatttttaacaaacattattga |
7667765 |
T |
|
| Q |
211 |
ggaacataaaacttctatttctaggagtgagaaacataaggatttattg |
259 |
Q |
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||||||| | | |||| || || || ||| |||||||||||||||||| |
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| T |
7667766 |
ggaacatgaggcatctaattataagaatgaaaaacataaggatttattg |
7667814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 282
Target Start/End: Original strand, 45480009 - 45480248
Alignment:
| Q |
37 |
tgatcctaaagctggtgattttaaggctatggttgatgagttgatggttttaggtggagttttcaacattggtgattttattccatcattggaatggcta |
136 |
Q |
| |
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|||||||| |||| ||| |||||| ||||||||| ||| | ||||| || | ||| |||||||| |||||||||||| |||| | || || ||| | |
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| T |
45480009 |
tgatcctagggctgatgagtttaagtctatggttgttgaacttatggtattggctggtgttttcaatattggtgattttcttcctgctttcgagtggttg |
45480108 |
T |
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| Q |
137 |
gaccttcaaggacttcaagctaaaatgaagaaattacacaagaggtttgatgcatttttaacaaacattattgaggaacataaaacttctatttctagga |
236 |
Q |
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|| |||||||| | |||| ||||||||| ||||||||||| || |||||| |||||||||||| |||||||||||| |||| ||||||| || |
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| T |
45480109 |
gatcttcaaggtgtgcaaggtaaaatgaaaaaattacacaaaagatttgatacatttttaacaagcattattgaggaccata------ggatttctaaga |
45480202 |
T |
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| Q |
237 |
gtgagaaacataaggatttattgagtactttgttgtcacttaaaga |
282 |
Q |
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||||||| || || ||||| |||||||| ||||||||||| ||||| |
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| T |
45480203 |
gtgagaagcacaatgatttgttgagtacgttgttgtcactcaaaga |
45480248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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