View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17189_low_15 (Length: 289)

Name: NF17189_low_15
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17189_low_15
NF17189_low_15
[»] chr8 (4 HSPs)
chr8 (122-271)||(20226522-20226671)
chr8 (1-115)||(38640646-38640760)
chr8 (1-115)||(43658924-43659038)
chr8 (28-120)||(43654317-43654409)
[»] chr7 (4 HSPs)
chr7 (122-271)||(44311034-44311183)
chr7 (12-115)||(41455374-41455477)
chr7 (12-115)||(41451690-41451793)
chr7 (12-115)||(32355265-32355368)
[»] chr4 (5 HSPs)
chr4 (16-115)||(6799156-6799255)
chr4 (12-118)||(8986601-8986709)
chr4 (12-115)||(42528325-42528420)
chr4 (42-101)||(6806927-6806985)
chr4 (12-115)||(8996077-8996182)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-115)||(7987-8101)
[»] chr2 (5 HSPs)
chr2 (12-109)||(8363327-8363424)
chr2 (37-115)||(8365589-8365667)
chr2 (12-121)||(27529112-27529221)
chr2 (25-111)||(40862766-40862852)
chr2 (12-45)||(33358022-33358055)
[»] chr1 (4 HSPs)
chr1 (14-120)||(47323296-47323399)
chr1 (12-120)||(47326868-47326976)
chr1 (12-120)||(13016347-13016455)
chr1 (74-115)||(291365-291406)
[»] chr3 (5 HSPs)
chr3 (12-115)||(28703675-28703778)
chr3 (50-115)||(32893713-32893778)
chr3 (12-114)||(36611959-36612062)
chr3 (14-69)||(8878851-8878906)
chr3 (1-41)||(32893791-32893831)
[»] chr5 (3 HSPs)
chr5 (12-120)||(40254887-40254992)
chr5 (12-115)||(26050033-26050138)
chr5 (12-115)||(26053447-26053552)
[»] chr6 (2 HSPs)
chr6 (12-115)||(27075000-27075105)
chr6 (12-115)||(27078363-27078468)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-69)||(206207-206264)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 20226671 - 20226522
Alignment:
Q  122 cagttagaagttcgttaagatttttagctagttagttgattgatttatctttgtatataagcacaataatcaacataattgtagtatattcattcccttc 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20226671 cagttagaagttcgttaagatttttagctagttcgttgattgatttgtctttgtatataagcacaataatcaacacaattgtagtatattcattcccttc 20226572  T
Q  222 aattcaaaacaagtttgcaaagctttattccatatctctcttttctttct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20226571 aattcaaaacaagtttgcaaagctttattccatatctctcttttctttct 20226522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 38640760 - 38640646
Alignment:
Q  1 tactctgggatagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtg 100  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||    
T  38640760 tactctgggggagttgcacaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttacgttttattttattattttgcaggttgtg 38640661  T
Q  101 atccttcagtcatcc 115  Q
    |||||||||||||||    
T  38640660 atccttcagtcatcc 38640646  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 43658924 - 43659038
Alignment:
Q  1 tactctgggatagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtg 100  Q
    |||||||||  |||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |||||| ||| |||||||||||||| ||||||||    
T  43658924 tactctgggggagttgcgcaattctgcggataattccttagtttagtgacattgtcatgcctcagattttacgtttcattttcttgttttgcaggttgtg 43659023  T
Q  101 atccttcagtcatcc 115  Q
    |||||||||| ||||    
T  43659024 atccttcagttatcc 43659038  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 43654317 - 43654409
Alignment:
Q  28 ggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtcatccacgaa 120  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  43654317 ggataattccttagttcagtgacattgtcacgcctcatgttttatgtttcattttcttgttttgcaggttgtgatccttcagtcatccgcgaa 43654409  T

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Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 44311183 - 44311034
Alignment:
Q  122 cagttagaagttcgttaagatttttagctagttagttgattgatttatctttgtatataagcacaataatcaacataattgtagtatattcattcccttc 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44311183 cagttagaagttcgttaagatttttagctagttcgttgattgatttgtctttgtatataagcacaataatcaacacaattgtagtatattcattcccttc 44311084  T
Q  222 aattcaaaacaagtttgcaaagctttattccatatctctcttttctttct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311083 aattcaaaacaagtttgcaaagctttattccatatctctcttttctttct 44311034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 41455477 - 41455374
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  41455477 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcagattttactttttattttcttgttttgtaggttatgatccttcagtc 41455378  T
Q  112 atcc 115  Q
    ||||    
T  41455377 atcc 41455374  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 41451793 - 41451690
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  41451793 agttgcacaattctgcggataattccttagtttagtgacatagtcacgcctcatgttttactttttattttcttgttttgcaggttatgatccttcagtc 41451694  T
Q  112 atcc 115  Q
    ||||    
T  41451693 atcc 41451690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 32355265 - 32355368
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    ||||||| ||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  32355265 agttgcgtaattctgcgaataatttcttagttcagtgatattgtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttcagtc 32355364  T
Q  112 atcc 115  Q
    ||||    
T  32355365 atcc 32355368  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 6799156 - 6799255
Alignment:
Q  16 gcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtcatcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6799156 gcgcaattctgcggataattccttagttcagtgacatagtcacgccacaggttttactttttattttcttattttgcaggttgtgatccttcagtcatcc 6799255  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 8986709 - 8986601
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgaca--tagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcag 109  Q
    |||||||||||||| |||||||||||||||| ||||||||  |||||||||||||| |||||| ||||||||  |||||||| ||| ||||||||||| |    
T  8986709 agttgcgcaattctacggataattccttagtccagtgacacgtagtcacgcctcagattttacgttttatttcattgttttgcagggtgtgatccttcgg 8986610  T
Q  110 tcatccacg 118  Q
    |||||||||    
T  8986609 tcatccacg 8986601  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 42528420 - 42528325
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    |||||||||||||||| ||||||||||||        |||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  42528420 agttgcgcaattctgcagataattcctta--------acatagtcacgcctcaagttttacgtttcattttcttgttttgcaggttgtgatccttcagtc 42528329  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 6806927 - 6806985
Alignment:
Q  42 ttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtga 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6806927 ttcagtgacatagtcacgcctcaggttttac-ttttattttcttgttttgtaggttgtga 6806985  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 8996182 - 8996077
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgaca--tagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcag 109  Q
    ||||| ||||||||||||||||||||||||| ||||||||  || |||| ||| || |||||| ||||||||  |||||||| ||| |||||||||||||    
T  8996182 agttgtgcaattctgcggataattccttagtccagtgacacgtaatcacaccttagattttacgttttatttcattgttttgcaggatgtgatccttcag 8996083  T
Q  110 tcatcc 115  Q
    ||||||    
T  8996082 tcatcc 8996077  T

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Target: scaffold0067 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7987 - 8101
Alignment:
Q  1 tactctgggatagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtg 100  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  7987 tactctgggggagttgcgcaattttgcggataattccttagttcagtgacatagtcacacctcaggttttactttttattttcttgttttgcaggttatg 8086  T
Q  101 atccttcagtcatcc 115  Q
    ||||||| |||||||    
T  8087 atccttccgtcatcc 8101  T

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Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 8363327 - 8363424
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  8363327 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcatcaggttttacctttcattttcttgttttgcaggttgtgatccttcag 8363424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 8365589 - 8365667
Alignment:
Q  37 cttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtcatcc 115  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||  |||||||||||||||||||||||    
T  8365589 cttagttcagtgacatagtcacgcctcaggttttatttttcatgttcttgtttttcaggttgtgatccttcagtcatcc 8365667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 27529112 - 27529221
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    ||||| |||||| ||||||||||||||||||  |||||| |||||||||||||  ||| | |||  ||||| ||||||||||| |||||||| ||| |||    
T  27529112 agttgtgcaattatgcggataattccttagtctagtgacgtagtcacgcctcatttttcagtttacattttattgttttgtagtttgtgatcattcggtc 27529211  T
Q  112 atccacgaaa 121  Q
    |||| |||||    
T  27529212 atccgcgaaa 27529221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 40862852 - 40862766
Alignment:
Q  25 tgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    ||||||||||| |||||||||||||    ||||| |||||  |||||||||  ||||| ||||||| |||||||||||| |||||||    
T  40862852 tgcggataattacttagttcagtgattacgtcacacctcatattttactttacattttattgttttataggttgtgatctttcagtc 40862766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 33358022 - 33358055
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttca 45  Q
    |||||||||||||| |||||||||||||||||||    
T  33358022 agttgcgcaattctacggataattccttagttca 33358055  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 47323296 - 47323399
Alignment:
Q  14 ttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtcat 113  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47323296 ttgcgcaattttgcggataattccttagttcggtgacatagtcacgc---aggttttactttttattttcttgttttgcaggttgtgatccttcagtcat 47323392  T
Q  114 ccacgaa 120  Q
    || ||||    
T  47323393 ccgcgaa 47323399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 47326868 - 47326976
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||| |||| |||||||||||| ||||||||||||||| |||    
T  47326868 agttgcgcaattctgcggatatttccttagttctgtgacatagtcacgcctcaaattttactctttactttcttgttttgcaggttgtgatccttctgtc 47326967  T
Q  112 atccacgaa 120  Q
    |||| ||||    
T  47326968 atccgcgaa 47326976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 13016455 - 13016347
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||  ||||| ||||| |||||||| ||||    
T  13016455 agttacgcaattctgcagataattccttagttcagtgacattgtcacgcctcagattttacgttttattttctgtttttgcaggttatgatcctttagtc 13016356  T
Q  112 atccacgaa 120  Q
    |||| ||||    
T  13016355 atccgcgaa 13016347  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 291365 - 291406
Alignment:
Q  74 ttttattttcttgttttgtaggttgtgatccttcagtcatcc 115  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  291365 ttttattttatcgttttgcaggttgtgatccttcagtcatcc 291406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 28703778 - 28703675
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||| ||||| |||||||||| ||    
T  28703778 agttgcgcaattctgcggataattccttagttcagtgacataatcatgcctcaaattttactttttattttcttgttttgcaggttatgatccttcactc 28703679  T
Q  112 atcc 115  Q
    ||||    
T  28703678 atcc 28703675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 32893713 - 32893778
Alignment:
Q  50 catagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtcatcc 115  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  32893713 catagtcacgcctcaggttttacttgttattttcttgttttgcaggttatgatccttcagtcatcc 32893778  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 36612062 - 36611959
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgaca-tagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagt 110  Q
    ||||||||||||||| | |||||| |||||| |||||||  ||||||||||| || |||||| ||| ||||| |||||||| ||||||||||||||||||    
T  36612062 agttgcgcaattctgtgaataatttcttagtccagtgacggtagtcacgccttagattttacgtttcattttattgttttgcaggttgtgatccttcagt 36611963  T
Q  111 catc 114  Q
    ||||    
T  36611962 catc 36611959  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8878906 - 8878851
Alignment:
Q  14 ttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttt 69  Q
    |||||||||  ||| |||||||  ||||||||||||| ||||||||||||||||||    
T  8878906 ttgcgcaatcttgctgataattgtttagttcagtgacgtagtcacgcctcaggttt 8878851  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32893831 - 32893791
Alignment:
Q  1 tactctgggatagttgcgcaattctgcggataattccttag 41  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  32893831 tactctgggggagttgcgcaattctgcggataatttcttag 32893791  T

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Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 40254887 - 40254992
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttactttttattttcttgttttgtaggttgtgatccttcagtc 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||| ||||||||| || ||||  |||||||||||||||||||    
T  40254887 agttgcgcaattctgtggataattccttagttcagtgacatagtcacgcct---gttttacgttttattttattattttacaggttgtgatccttcagtc 40254983  T
Q  112 atccacgaa 120  Q
    |||| ||||    
T  40254984 atccgcgaa 40254992  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 26050033 - 26050138
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctca-ggtttta-ctttttattttcttgttttgtaggttgtgatccttcag 109  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||| |||  ||||||| |||||||||| ||||||    
T  26050033 agttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgcaggttgtgatacttcag 26050132  T
Q  110 tcatcc 115  Q
    ||||||    
T  26050133 tcatcc 26050138  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 26053447 - 26053552
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctca-ggtttta-ctttttattttcttgttttgtaggttgtgatccttcag 109  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||| |||  ||||||| |||||||||| ||||||    
T  26053447 agttgcgcaattctacggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgcaggttgtgatacttcag 26053546  T
Q  110 tcatcc 115  Q
    ||||||    
T  26053547 tcatcc 26053552  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 27075000 - 27075105
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctca-ggtttta-ctttttattttcttgttttgtaggttgtgatccttcag 109  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||| ||| |||||||| |||||||||| ||||||    
T  27075000 agttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttattgttttgcaggttgtgatacttcag 27075099  T
Q  110 tcatcc 115  Q
    ||||||    
T  27075100 tcatcc 27075105  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 27078363 - 27078468
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctca-ggtttta-ctttttattttcttgttttgtaggttgtgatccttcag 109  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||| |||  ||||||| |||||||||| ||||||    
T  27078363 agttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgcaggttgtgatacttcag 27078462  T
Q  110 tcatcc 115  Q
    ||||||    
T  27078463 tcatcc 27078468  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 206207 - 206264
Alignment:
Q  12 agttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcaggttt 69  Q
    |||||||| ||| || ||||||||||||||| || |||| ||||||||||||| ||||    
T  206207 agttgcgctattatgtggataattccttagtccaatgacctagtcacgcctcaagttt 206264  T

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