View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_low_16 (Length: 220)
Name: NF17189_low_16
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 23081000 - 23081196
Alignment:
| Q |
14 |
taaacaatgctgggacatttactcctaaactcatcatagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcattt |
113 |
Q |
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| T |
23081000 |
taaacaatgctggaatatttactcctaaacccatcatggattatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcattt |
23081099 |
T |
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| Q |
114 |
gtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgcaggattcaaagcccggccctttgcttct |
210 |
Q |
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| T |
23081100 |
gtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgcaggactcaaagcctggccttttgcttct |
23081196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 23091898 - 23092079
Alignment:
| Q |
14 |
taaacaatgctgggacatttactcctaaactcatcatagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcattt |
113 |
Q |
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| T |
23091898 |
taaacaatgctggaatatttactcctaaacccatcatggattatactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccattt |
23091997 |
T |
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| Q |
114 |
gtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgcaggattcaaagcc |
195 |
Q |
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| T |
23091998 |
gtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtatacatatcctcaatttcaggtctcaaagcc |
23092079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 23026445 - 23026557
Alignment:
| Q |
49 |
atagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctg |
148 |
Q |
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| T |
23026445 |
atagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctg |
23026544 |
T |
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| Q |
149 |
gaaatggaagcat |
161 |
Q |
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| T |
23026545 |
gatatggaagcat |
23026557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 23035249 - 23035361
Alignment:
| Q |
49 |
atagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctg |
148 |
Q |
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||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
23035249 |
atagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctg |
23035348 |
T |
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| Q |
149 |
gaaatggaagcat |
161 |
Q |
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|| |||||||||| |
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| T |
23035349 |
gatatggaagcat |
23035361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 23069090 - 23069244
Alignment:
| Q |
19 |
aatgctgggacatttactcctaaactcatcatagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtc |
118 |
Q |
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|||||||||||| |||||||||| || |||| |||||| ||||||| | |||| |||||| |||| || |||| ||| |||| |||||||||| |
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| T |
23069090 |
aatgctgggacaattactcctaagacaatgctagaacatactgctgaagatgtgacaaatacaatgggtattaactttgaatctagttaccatttgtgtc |
23069189 |
T |
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| Q |
119 |
aacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatc |
173 |
Q |
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||||||||||||| ||| ||||| |||||||| |||| |||||||||| |||||| |
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| T |
23069190 |
aacttgcacacccacttttaaaagaatctggatatgggagcattgtatccatatc |
23069244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 30798661 - 30798737
Alignment:
| Q |
106 |
tatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgc |
182 |
Q |
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|||||||||||||||||| |||| ||||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
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| T |
30798661 |
tatcatttgtgtcaacttacacatcctcttctaaaggcatatggaatgggaagcattgtattcatttcctctattgc |
30798737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 30706270 - 30706209
Alignment:
| Q |
115 |
tgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
176 |
Q |
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| T |
30706270 |
tgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctc |
30706209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 30790311 - 30790368
Alignment:
| Q |
113 |
tgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcat |
170 |
Q |
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|||| |||||| |||| |||||||||||| ||||||||||||| |||||||| ||||| |
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| T |
30790311 |
tgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcat |
30790368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 30699420 - 30699381
Alignment:
| Q |
130 |
cctcttctaaaacaatctggaaatggaagcattgtattca |
169 |
Q |
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| T |
30699420 |
cctcttcttaaagaatctggaaatggaagcattgtattca |
30699381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 30719238 - 30719192
Alignment:
| Q |
130 |
cctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
176 |
Q |
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| T |
30719238 |
cctcttcttaaagaatctggaaatggaagcattgttttcatttcctc |
30719192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 30868506 - 30868431
Alignment:
| Q |
106 |
tatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgc |
182 |
Q |
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| T |
30868506 |
tatcatttgtgccaacttaca-atcctcttctaaagacatctggaatgggaagcattgtattcatttcctctattgc |
30868431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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