View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_low_18 (Length: 207)
Name: NF17189_low_18
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 47988543 - 47988722
Alignment:
| Q |
9 |
agcaaaggtagaaattaaaaatggcattacagcatgtggtagaaacatggtggatataaataaccnnnnnnnnnnnnn---gtgcagaaaagtatcaaca |
105 |
Q |
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| T |
47988543 |
agcaagggtagaaattaaaaatggcattacagcatgtggtagaaacatggtggatataaataaccaaaaaaaaaaaaaaaagtgcagaaaagtatcaaca |
47988642 |
T |
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| Q |
106 |
tatgagaagagcattgtatggataatgataaattactaaccagtgtggtctccaaaattaaacttgtatgctcttgatgcag |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47988643 |
tatgagaagagcattgtatggataatgataaattactaacca--gtggtctccaaaattaaacttgtatgctcttgatgcag |
47988722 |
T |
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