View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_low_2 (Length: 499)
Name: NF17189_low_2
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 9956034 - 9956502
Alignment:
| Q |
13 |
gcacagatcaacccattacaaatctttgatgtaaacaaacatttgagagaagttttaaaattgcaagggactggtgaagccaaattacgatcatttaaag |
112 |
Q |
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| T |
9956034 |
gcacagatcaacccattacaaatcattgatgtaaacaaacatttgagagaagttttaaaattgcaagggactggtgaagccaaattacgatcatttaaag |
9956133 |
T |
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| Q |
113 |
ttcaagatgagtcagtttgaccaaaagaatatgcgatgtggatgcttcaggttatactagcaaccggtatatagttctgttagtatcaatactcttgggg |
212 |
Q |
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| T |
9956134 |
ttcaagatgagtcagtttgaccaaaagaatatgtgatgtggatgcttcaggttatactagcaaccggtatatagttctgttagtatcaatactcttgggg |
9956233 |
T |
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| Q |
213 |
gactccatatatttacaaatataagtcattgagggttctagactaaatattttgagacaaaagaagcagaagataaagtgctctagaaaagaacagaaaa |
312 |
Q |
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| T |
9956234 |
gactccatatatttacaaatataagtcattgagggttctagactaaatattttgagacaaaagaagcagaagataaagtgctctagaaaagaacagaaaa |
9956333 |
T |
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| Q |
313 |
tattttcttactgcagcttgtaatagttaatttttggatctataccaaccactacagctccaacctgcagaagtgaactcgtcagttaacttcaagcagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9956334 |
tattttcttactgcagcttgtaatagttaatttttggatctataccaaccactacagctccaacctgcagaagtgaactcgtcagttaacttcaagcagt |
9956433 |
T |
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| Q |
413 |
gatctcaacgaagttactcaaagtaacaatgggcaaggtgttacattacactcttatcatgttcaaaaa |
481 |
Q |
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| T |
9956434 |
gatctcaacgaagttactcaaagtaacaatgggcaaggtgttacattacactcttatcatgttcaaaaa |
9956502 |
T |
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