View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17189_low_5 (Length: 394)
Name: NF17189_low_5
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17189_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 3658949 - 3658589
Alignment:
| Q |
19 |
aatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttct |
118 |
Q |
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| T |
3658949 |
aatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttct |
3658850 |
T |
|
| Q |
119 |
ccattctcattaataaacctttcaggtaaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcc |
218 |
Q |
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| T |
3658849 |
ccattctcattaataaacctttcaggtaaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcc |
3658750 |
T |
|
| Q |
219 |
cttttggtacataatagtcttgaatgtaacaatcttctgttgcttcatggggtactaatagtggacctggagggtataaccttaaagtttctttcacaat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3658749 |
cttttggtacataatagtcttgaatgtaacaatcttctgttacttcatggggtactaatagtggacctggagggtataaccttaaagtttctttcacaat |
3658650 |
T |
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| Q |
319 |
tgcttgcaaataaactaggttttttatgtctgatgattctacccttctgtccctacctatg |
379 |
Q |
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| T |
3658649 |
tgcttgcaaataaactaggttttttatgtctgatgattctacccttctgtccctacctatg |
3658589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 31 - 378
Target Start/End: Complemental strand, 7843191 - 7842844
Alignment:
| Q |
31 |
ttgtgtagcaaacaacgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcatta |
130 |
Q |
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| T |
7843191 |
ttgtgtagcaaacaaagatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatgatgactttcatgatcaatttctccattctcatta |
7843092 |
T |
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| Q |
131 |
ataaacctttcaggtaaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacat |
230 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||| |
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| T |
7843091 |
ataaacctttcaggtaaaaacttttcaggctctgaccaaatacttggatctctatgtaatttccatacattgaaaaatacacgtgttccttttggtacat |
7842992 |
T |
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| Q |
231 |
aatagtcttgaatgtaacaatcttctgttgcttcatggggtactaatagtggacctggagggtataaccttaaagtttctttcacaattgcttgcaaata |
330 |
Q |
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||||| ||||||||| |||||||||||| |||||||||||| ||| ||||||| ||| ||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
7842991 |
aatagccttgaatgttacaatcttctgtggcttcatggggtgctagtagtggagctgctgggtataacctcaaagtttcttttaaaattgcttgcaaata |
7842892 |
T |
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| Q |
331 |
aactaggttttttatgtctgatgattctacccttctgtccctacctat |
378 |
Q |
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||| | |||||||||||| || ||||||||||||||| || ||||||| |
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| T |
7842891 |
aaccaagttttttatgtccgacgattctacccttctgcccttacctat |
7842844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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