View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17189_low_7 (Length: 340)

Name: NF17189_low_7
Description: NF17189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17189_low_7
NF17189_low_7
[»] chr5 (2 HSPs)
chr5 (16-328)||(40867422-40867733)
chr5 (16-92)||(35669070-35669146)
[»] scaffold1790 (1 HSPs)
scaffold1790 (26-92)||(1-67)
[»] chr7 (2 HSPs)
chr7 (16-92)||(15332230-15332306)
chr7 (27-92)||(3106418-3106483)
[»] chr4 (3 HSPs)
chr4 (16-92)||(46118132-46118208)
chr4 (16-92)||(46131266-46131342)
chr4 (16-89)||(36671926-36671999)
[»] chr1 (2 HSPs)
chr1 (17-92)||(32498247-32498322)
chr1 (22-76)||(43355377-43355431)
[»] chr8 (1 HSPs)
chr8 (16-81)||(5078927-5078992)
[»] chr2 (1 HSPs)
chr2 (27-92)||(8380645-8380710)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 40867422 - 40867733
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatactttttgaaaagtatttctttttaacttg 115  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||    
T  40867422 gcattctcggccgtccgatcatgatcgaatggtcctaatttaagaacagaattatgaataaaaattgaatactttttgaaaagtatttcttta-aacttg 40867520  T
Q  116 gaagtgtgagaaagaaggatttaccattgaagcaatggcttgaacacctgaatatttaacatcccagctaaattctgtcatagcccaagtggtcccacca 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40867521 caagtgtgagaaagaaggatttaccattgaagcaatggcttgaacacctgaatatttaacatcccagctaaattctgtcatagcccaagtggtcccacca 40867620  T
Q  216 aaatcattagcattctccaaaacatacttcaaatattcatccttttctgtggccttatataaccaaattgctgcccatagcaactcatccatgtacccac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40867621 aaatcattagcattctccaaaacatacttcaaatattcatccttttctgtggccttatataaccaaattgctgcccatagcaactcatccatgtacccac 40867720  T
Q  316 taactgaagtata 328  Q
    |||||||||||||    
T  40867721 taactgaagtata 40867733  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 35669146 - 35669070
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||||||||| |||| |||||| |  ||||||||||||||| |||||| |||||||||||||| || ||||||||||    
T  35669146 gcattctcggtcgtctgatcataaagggatggtcctgatttgagaacagaattataaataaaatttaaatacttttt 35669070  T

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Target: scaffold1790 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 1 - 67
Alignment:
Q  26 ccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  1 ccgtccgatcattattggatggtcctgatttgagaacataattataaataaaaattaaatatttttt 67  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 15332306 - 15332230
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    ||||||||| || ||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||    
T  15332306 gcattctcgaccatccgatcataatcggatgatcctgatttgagaacagaattataaataaaaattaaatacttttt 15332230  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 3106483 - 3106418
Alignment:
Q  27 cgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||| |||||| ||| ||||  |||||||| |||||| |||||||||||||| || ||||||||||    
T  3106483 cgtctgatcatgatcagatgaccctgatttgagaacagaattataaataaaatttaaatacttttt 3106418  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 46118208 - 46118132
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||||||||||||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||||| ||||||||||    
T  46118208 gcattctcggccgtccaatcatgaccggatggtcctaatttgagaacagaattataaataaaaattaaatacttttt 46118132  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 46131342 - 46131266
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||||||||||||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||||| ||||||||||    
T  46131342 gcattctcggccgtccaatcatgaccggatggtcctaatttgagaacagaattataaataaaaattaaatacttttt 46131266  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 36671999 - 36671926
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatactt 89  Q
    |||||||| ||| ||| || || ||||||||||||||||||||||| | ||||||||||||| ||| |||||||    
T  36671999 gcattctcagccatccaatgatgatcggatggtcctgatttaagaatagaattataaataaagattaaatactt 36671926  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 32498322 - 32498247
Alignment:
Q  17 cattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||| |||| |||||||||||| ||||||||||    
T  32498322 cattctcgaccgtccgatcatgatcgaatggtcatgatttaagaacagaattgtaaataaaaattaaatacttttt 32498247  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 43355431 - 43355377
Alignment:
Q  22 tcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataa 76  Q
    |||||||||||||||| || ||||| || |||||| |||||| ||||||||||||    
T  43355431 tcggccgtccgatcatgataggatgatcttgatttgagaacagaattataaataa 43355377  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 5078992 - 5078927
Alignment:
Q  16 gcattctcggccgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaatt 81  Q
    |||||||||| ||||||||||| |||| ||||||||||||| |||||| | |||||||||||||||    
T  5078992 gcattctcggtcgtccgatcatgatcgaatggtcctgatttgagaacagatttataaataaaaatt 5078927  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 8380645 - 8380710
Alignment:
Q  27 cgtccgatcattatcggatggtcctgatttaagaacataattataaataaaaattgaatacttttt 92  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||||||||| |||| |||||    
T  8380645 cgtccgattatgatcggatggtcctgatttgagaacagaattataaataaaaattaaataattttt 8380710  T

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