View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1718_high_10 (Length: 331)

Name: NF1718_high_10
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1718_high_10
NF1718_high_10
[»] chr2 (2 HSPs)
chr2 (15-249)||(7676400-7676636)
chr2 (99-159)||(39613877-39613937)
[»] chr5 (3 HSPs)
chr5 (15-181)||(17460087-17460252)
chr5 (99-157)||(27178385-27178443)
chr5 (204-239)||(17460013-17460048)
[»] chr6 (4 HSPs)
chr6 (15-160)||(22791946-22792096)
chr6 (99-159)||(17866419-17866479)
chr6 (99-159)||(17875973-17876033)
chr6 (99-159)||(32984591-32984651)
[»] chr3 (2 HSPs)
chr3 (99-159)||(25535691-25535751)
chr3 (99-159)||(14308098-14308158)
[»] chr8 (1 HSPs)
chr8 (99-158)||(32135801-32135860)
[»] chr7 (3 HSPs)
chr7 (99-162)||(2092605-2092668)
chr7 (102-139)||(19160825-19160862)
chr7 (102-139)||(20760224-20760261)
[»] chr4 (1 HSPs)
chr4 (99-159)||(29897150-29897210)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 7676400 - 7676636
Alignment:
Q  15 tttgttgaagattcttgttgtaaagatagtgaagttctatcttatttgagtaggaagattgttacagaagttttggagcgagatttgcttgtaacaaaga 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  7676400 tttggtgaagattcttgttgtaaagatagtgaagttctatcttatttgagtaggaagattgttacaaaagttttggggcgagacttgcttgtaacaaaga 7676499  T
Q  115 ttctaacatagtaaaatctttcacgaggtgtgaagggattggactacccgtaggttagaaagggaactcgtataatctc--tgtgtctttttctttattt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7676500 ttctaacatagtaaaatctttcacgaggtgtgaagggattggactacccgtaggttagaaagggaactcgtataatctctttgtgtctttttctttattt 7676599  T
Q  213 ttcagcatatcgttcatatattcatcacaatttttcg 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  7676600 ttcagcatatcgttcatatattcatcacaatttttcg 7676636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 39613937 - 39613877
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| || || ||| || |||||||||||| ||||||    
T  39613937 ttgcttgtaacaaagattctaacatagtgaattccttcgcggggtgtgaagggagtggact 39613877  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 17460252 - 17460087
Alignment:
Q  15 tttgttgaagattcttgttgtaaagatagtgaagttctatcttatttgagtaggaagattgttacagaagttttggagcgagatttgcttgtaacaaaga 114  Q
    |||| ||||||||||||||||||||||| |  |||||||||||  || |||||||||||||||| || ||| |||| | |||| |||||||||||||| |    
T  17460252 tttggtgaagattcttgttgtaaagatacttgagttctatcttggttaagtaggaagattgttagaggagtcttggggtgagacttgcttgtaacaaa-a 17460154  T
Q  115 ttctaacatagtaaaatctttcacgaggtgtgaagggattggactacccgtaggttagaaagggaac 181  Q
    |||| ||||||  ||||| || ||| |||||||||||| |||||||||| |||||||||| ||||||    
T  17460153 ttcttacatagcgaaatcctttacggggtgtgaagggactggactacccttaggttagaacgggaac 17460087  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 27178385 - 27178443
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattgga 157  Q
    |||||||||||||||||| ||||||||| || || |||||| |||||||||||| ||||    
T  27178385 ttgcttgtaacaaagattataacatagtgaattcattcacgcggtgtgaagggaatgga 27178443  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 17460048 - 17460013
Alignment:
Q  204 tctttatttttcagcatatcgttcatatattcatca 239  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17460048 tctttatttttcagcatatcgttcatacattcatca 17460013  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 22791946 - 22792096
Alignment:
Q  15 tttgttgaagattcttgttgtaaagatagtgaagttctatcttatttgagtaggaagattgttacagaagttttgg-----agcgagatttgcttgtaac 109  Q
    |||| |||| |||| |||||||||||||||| |||||||||||  |||| |||||| ||||||| |||||  ||||     || |||  |||||||||||    
T  22791946 tttggtgaaaattcctgttgtaaagatagtggagttctatcttggttgactaggaaaattgttagagaagacttggggtgaagtgaggcttgcttgtaac 22792045  T
Q  110 aaagattctaacatagtaaaatctttcacgaggtgtgaagggattggacta 160  Q
    ||||||| ||||||||| ||||| |||| | ||| |||||||  |||||||    
T  22792046 aaagattttaacatagtgaaatccttcatggggtatgaaggggatggacta 22792096  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 17866419 - 17866479
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| ||||| |||  | |||||||||||| ||||||    
T  17866419 ttgcttgtaacaaagattctaacatagtgaaatccttcgtggggtgtgaagggagtggact 17866479  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 17875973 - 17876033
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| ||||| |||  | |||||||||||| ||||||    
T  17875973 ttgcttgtaacaaagattctaacatagtgaaatccttcgtggggtgtgaagggagtggact 17876033  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 32984591 - 32984651
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| || || ||| || |||| ||||||| ||||||    
T  32984591 ttgcttgtaacaaagattctaacatagtgaattccttcgcggggtgcgaagggagtggact 32984651  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 25535751 - 25535691
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| || || ||| || |||||||||||| ||||||    
T  25535751 ttgcttgtaacaaagattctaacatagtgaattccttcgcggggtgtgaagggagtggact 25535691  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 14308158 - 14308098
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||| ||||||||| ||||| ||| |  |||||||||||| ||||||    
T  14308158 ttgcttgtaacaaagattataacatagtgaaatccttcgcagggtgtgaagggagtggact 14308098  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 32135801 - 32135860
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggac 158  Q
    |||||||||||||||||||||| ||||| || || ||| || |||||||||||| |||||    
T  32135801 ttgcttgtaacaaagattctaatatagtgaattccttcgcggggtgtgaagggagtggac 32135860  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 2092605 - 2092668
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggactacc 162  Q
    |||||||||||||||||||||||||||| || || |||  | |||||||||||| |||| ||||    
T  2092605 ttgcttgtaacaaagattctaacatagtgaattccttcgtggggtgtgaagggagtggagtacc 2092668  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 19160825 - 19160862
Alignment:
Q  102 cttgtaacaaagattctaacatagtaaaatctttcacg 139  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  19160825 cttgtaacaaagattctaacatagtgaaatccttcacg 19160862  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 20760224 - 20760261
Alignment:
Q  102 cttgtaacaaagattctaacatagtaaaatctttcacg 139  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  20760224 cttgtaacaaagattctaacatagtgaaatccttcacg 20760261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 29897150 - 29897210
Alignment:
Q  99 ttgcttgtaacaaagattctaacatagtaaaatctttcacgaggtgtgaagggattggact 159  Q
    |||||||||||||||||||||||||||| || || ||| |  |||||||| ||| ||||||    
T  29897150 ttgcttgtaacaaagattctaacatagtgaattccttcgcagggtgtgaatggagtggact 29897210  T

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