View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_high_19 (Length: 246)
Name: NF1718_high_19
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 11307965 - 11308180
Alignment:
| Q |
12 |
cataggaacaacgctttcttctgtttccttcactgatactgaaaaaattattggtggtttttctcgaaacgccaccaaaactgtttatggtaaaatcttc |
111 |
Q |
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| T |
11307965 |
cataggaacaacgctttcttctgtttccttcactgatactgaaaaaattattggtggtttttctcgaaacgccaccaaaactgtttatggtaaaatcttc |
11308064 |
T |
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| Q |
112 |
taaacttattcatttcactgtttgtaagggttttgttttcagtcgtcgtagttcatgcagaatattttaagtgttcgagatttgaacctcgtactttgca |
211 |
Q |
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| T |
11308065 |
taaacttattcatttcactgtttgtaagggttttgttttcagtcgtcgtagttcatgcagaatattttaagtgttcgggatttaaacctcgtactttgca |
11308164 |
T |
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| Q |
212 |
tattttatgcgttgtc |
227 |
Q |
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|||||||||||||||| |
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| T |
11308165 |
tattttatgcgttgtc |
11308180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 16125023 - 16125063
Alignment:
| Q |
186 |
tcgagatttgaacctcgtactttgcatattttatgcgttgt |
226 |
Q |
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| T |
16125023 |
tcgagatttgaacctcggactttgcatatattatgcattgt |
16125063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 39054055 - 39054019
Alignment:
| Q |
188 |
gagatttgaacctcgtactttgcatattttatgcgtt |
224 |
Q |
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| T |
39054055 |
gagatttgaaccgcggactttgcatattttatgcgtt |
39054019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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