View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1718_high_2 (Length: 502)
Name: NF1718_high_2
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 50557707 - 50557227
Alignment:
| Q |
14 |
ttgtcaaataggggtactatagtggagcggattttgacgaatgcttttgaaaactgcgacactatcctagttttgcaatcgggtaatagtggctgctatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
50557707 |
ttgtcaaataggggtactatagtggagcagattttgacgaatgcttttgaaaactgcgacactatcctagtttcgcagttgggtaatagtggctgctatt |
50557608 |
T |
|
| Q |
114 |
tcatttttgtcatatcagatgtagctgcaaaagcaggaaaaagtcaactttatggtttttcttgttctatttttaaaatataaaaactgaagtatcggtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50557607 |
tcatttttgtcatatcagatgtagctgcaaaagcaggaaaaagtcaactttatggtttttcttgttctatttttaaaatataaaaactgaagtatcggtg |
50557508 |
T |
|
| Q |
214 |
aatattactcctctaatcgtcaataatactttgcctgcaattgtactctgcctgcattctctttcaacatgtcttccatcttcagcaaattttaatgttt |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50557507 |
aatattactcctctaatcgccaataatactttgcctgcaattgtactctgcctgcattctctttcaacatgtcttccatcttcagcaaattttaatgttt |
50557408 |
T |
|
| Q |
314 |
aagctttttaatattgtttccagtaatcactagccagaattatgaattatcggtattctttttt-aaatgattgatcttttgagttaatattatgccacn |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50557407 |
aagctttttaatattgtttccagtattcactagccagaattatgaattatcggtattcttttttaaaatgattgatcttttgagttaatattatgccac- |
50557309 |
T |
|
| Q |
413 |
nnnnnnnattttaatgtta-gttaagcaactttttatttgtatactgtaaatcctcatgataaacatttgtctatcctatgct |
494 |
Q |
| |
|
|||||| | | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50557308 |
-ttttttattttattttaatgttaagcaaatttttatttgtatactgtaaatcctcatgataaacatttgtctatcctatgct |
50557227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University