View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1718_high_4 (Length: 433)
Name: NF1718_high_4
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 15101237 - 15101653
Alignment:
| Q |
11 |
cataggtgcactgcttattttcctttatttggccttataggttgttgacccagatgaatnnnnnnnnnnnnnnnggtattggatgaaccttggaaggatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15101237 |
cataggtgcactgcttattttcctttatttggccttataggttgttgacccagatgaataaaaaattgaaaaaaggtgttggatgaaccttggaaggatg |
15101336 |
T |
|
| Q |
111 |
tacttggattattacatacttatttgtcaagaaatagggaaccgtctaaaa-cttatcacgaccagtagttttggactgtaggttgagcgagccatactg |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
15101337 |
tacttggattattacatgcttatttgtcaagaaatagggaaccgtctaaaaacctatcacgaccagtagttttggactgtatgttgagtgagccatactg |
15101436 |
T |
|
| Q |
210 |
cttttctttgagtgcaatgacaaccggctcaatgcaaaaaatttcacgaatgatttggcatttgtgatgagcatgga-----aaatttattttt----tg |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
15101437 |
cttt-ctttgagtgcaatgacaaccggctcaatgcaaaaattttcacgaatgatttggcatttgtgatgagcatggattattttatttattttttttctt |
15101535 |
T |
|
| Q |
301 |
aatgaaggaatgagtatggaaaaatgaatagttatgattctgagtatgaaagtgaatgaacgaataaattgtgaccaataaccatatgtcaaacttcaaa |
400 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15101536 |
aaagaaggaatgagtatggaaaaatgaatagttatgattataagtacgaaagtgaatgcatgaataaattgtgaccaataactatatgtcaaacttcaaa |
15101635 |
T |
|
| Q |
401 |
agtttggcatagtgttat |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15101636 |
agtttggcatagtgttat |
15101653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University