View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1718_high_6 (Length: 409)
Name: NF1718_high_6
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 30870438 - 30870197
Alignment:
| Q |
21 |
gtgcaaggctagctgcagatgcgtatcagcttgcacctgctgtccatttgcgtgcagcagcaacatgctcgggtgcacagattacttgattatagtataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30870438 |
gtgcaaggctagctgcagatgcgtatcagcttgcaactgctgtccatttgcgtgcagcagcaacatgctcgggtgcacggattacttgattatagtataa |
30870339 |
T |
|
| Q |
121 |
ttatacgtcaatatat--atattctgtattataaatactttttaaaaaatgtgtaaagaaaattcaagctgcacatatcaacattttctaactaac---- |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30870338 |
ttatacgtcaatatatatatattctgtattataaatactttttaaaaaatgtgtaaagaaaattcaagctgcacatatcaacattttctaactaactaat |
30870239 |
T |
|
| Q |
215 |
--taatgtggattcattaaatttaacttttttatatattttt |
254 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30870238 |
agtaatgtggactcattaaatttaacttttttatatattttt |
30870197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 30870015 - 30869930
Alignment:
| Q |
250 |
tttttatacaaatttatattggatgtcccttgttgagactttatatctcaactaacctaaactacaaaatattattcatataaggt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30870015 |
tttttatacaaatttatattggatgtcccttgttgagactttatatctcaactaacctaaactacaaaatatcattcatataaggt |
30869930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 30869896 - 30869861
Alignment:
| Q |
364 |
acaaaatatcagtattttttatgcataatagtataa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30869896 |
acaaaatatcagtattttttatgcataatagtataa |
30869861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University