View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1718_high_8 (Length: 357)

Name: NF1718_high_8
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1718_high_8
NF1718_high_8
[»] chr1 (1 HSPs)
chr1 (53-347)||(49946281-49946575)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 53 - 347
Target Start/End: Complemental strand, 49946575 - 49946281
Alignment:
Q  53 acttggtagcttaatagatatagctaacctcactacgagaaaaggacttttaaagtcattacttatacgtacctatacttaggtagctctagctagctga 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49946575 acttgctagcttaatagatatagctaacctcactacgagaaaaggacctttaaagtcattacttatacgtacctatacttaggtagctctagctagctga 49946476  T
Q  153 agtgattagatagaacccaaagttactgagacatatttcaggcggctaagaaacataggcttgaattatagacttaatccatttttgggcaagccacggg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49946475 agtgattagatagaacccaaagttactgagacatatttcaggcggctaagaaacataggcttgaattatagacttaatccatttttgggcaagccacggg 49946376  T
Q  253 catgcatgaatgtggggacagatattagggtttccaggtgcttaaaagtgcaaaaactgatgcataatacaaacctaataaagctagtagtatta 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49946375 catgcatgaatgtggggacagatattagggtttccaggtgcttaaaagtgcaaaaactgatgcataatacaaacctaataaagctagtagtatta 49946281  T

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