View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_1 (Length: 534)
Name: NF1718_low_1
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 55569356 - 55568838
Alignment:
| Q |
1 |
acacactacacaaagatggaagaaagggaaaacactgaaacgtatatattggattatttcttttcttttatttgttaaagccattttcaaagcttagtta |
100 |
Q |
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| T |
55569356 |
acacactacacaaagatggaagaaagggaaaacactgaaacgtatatattggattatttcttttcttttatttgttaaagccattttcaaagcttagtaa |
55569257 |
T |
|
| Q |
101 |
cctttagaagaagtatagtggctttgacatttatctcccataacttgtcaaggaccgaatcttgggtttgcagaatggaatcaacagaaggatttgcagc |
200 |
Q |
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| T |
55569256 |
cctttagaagaagtatagtggctttgacatttatctcccataacttgtcaaggaccgaatcttgggtttgcagaatggaatcaacagaaggatttgcagc |
55569157 |
T |
|
| Q |
201 |
agcattggacacaacgacatctatctttccatacttctgtaacaggccnnnnnnnnnnntcaaacacatgttataactccattcaaatagcgagaaagac |
300 |
Q |
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| T |
55569156 |
agcattggacacaacgacatctatctttccatacttctgtaacaggccaaaaaaaaaa-tcaaacacatgttataactccattcaaattgcgagaaagac |
55569058 |
T |
|
| Q |
301 |
agactataatatgaaagattattaaactacactgtaaaaaccaaagccaaaatcataataacaaaacatatcctccgccaattctatttagacttgtaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55569057 |
agactataatatgaaagattattaaactacactgaaaaaaccaaagccaaaatcataataacaaaacatatcctccgccaattctatttagacttgtaca |
55568958 |
T |
|
| Q |
401 |
aaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcgg-aacctcgagaggggatcaaatc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55568957 |
aaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcggcaacctcgagaggggatcaaatc |
55568858 |
T |
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| Q |
500 |
ccatataggatagttgtaaa |
519 |
Q |
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| T |
55568857 |
ccatataggatagttgtaaa |
55568838 |
T |
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