View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_11 (Length: 293)
Name: NF1718_low_11
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 41380199 - 41380477
Alignment:
| Q |
1 |
aacaaaattacaaaacctagctcatataatgtatctgtagtttaattttctcatctatttttacactttctaagttttgtacttcattcaagcatctatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380199 |
aacaaaattacaaaacctagctcatataatgtatctgtagtttaattttctcatccatttttacactttctaagttttgtacttcattcaagcatctatt |
41380298 |
T |
|
| Q |
101 |
atagatgctatacaaacaccaaccaaagtctcacc-aaaaaagcttcacttaaaacatttaagcaagnnnnnnnnntcattgaatcttccacacac-aaa |
198 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
41380299 |
atagatgctatacaaacaccaaccaaagtctccccaaaaaaagcttcacttaaaacatttaagcaagaaaaaaaaatcattgaatcttccacacacaaaa |
41380398 |
T |
|
| Q |
199 |
aatatcattgaatagaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatag |
277 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380399 |
aatatcattgaatacaagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatag |
41380477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 8043819 - 8043716
Alignment:
| Q |
176 |
tcattgaatcttccacacacaaaaa-tatcattgaatagaagcaatttccttcattt-gttcttcaattgaaactcaattatgtacattgaaattggaaa |
273 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| ||| |
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| T |
8043819 |
tcattgaatcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaaatatgtacattgaaattgaaaa |
8043720 |
T |
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| Q |
274 |
atag |
277 |
Q |
| |
|
|||| |
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| T |
8043719 |
atag |
8043716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8043995 - 8043890
Alignment:
| Q |
1 |
aacaaaattacaaaacctagctcatataatgtatctgtagtttaa-ttttctcatctatttttacactttctaagttttgtacttcattcaagcatctat |
99 |
Q |
| |
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|||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||| |||| | | |||||| || |||||| ||| |||||||||||| |
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| T |
8043995 |
aacaaaattataaaacctaactcatattatgtatctgtagtttaatttttctcatcctttttcatagtttctatgtgttgtacatcaatcaagcatctat |
8043896 |
T |
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| Q |
100 |
tataga |
105 |
Q |
| |
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|||||| |
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|
| T |
8043895 |
tataga |
8043890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8034019 - 8033905
Alignment:
| Q |
1 |
aacaaaattacaaaacctagctcatata----atgtatctgtagtttaattttctcatctattttt---acactttctaagttttgtacttcattcaagc |
93 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| | ||||| | ||||||||| |||||||||||| ||||| |
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| T |
8034019 |
aacaaaattacaaaacctagctcatatatataatgtatctgtagcttaattt-ctcatttttttttttaatactttctaa-ttttgtacttcaaccaagc |
8033922 |
T |
|
| Q |
94 |
atctattatagatgcta |
110 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
8033921 |
atctattatagatgcta |
8033905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7969761 - 7969879
Alignment:
| Q |
1 |
aacaaaattacaaaacctagctcatata----atgtatctgtagtttaattttctcatctat-------ttttacactttctaagttttgtacttcattc |
89 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||| ||| | ||||||||| |||||||||||| || |
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| T |
7969761 |
aacaaaattacaaaacctagctcatatatataatgtatctgtagcttaattt-ctcatatatatatttttttaatactttctaa-ttttgtacttcaatc |
7969858 |
T |
|
| Q |
90 |
aagcatctattatagatgcta |
110 |
Q |
| |
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||||||||||||||||||||| |
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| T |
7969859 |
aagcatctattatagatgcta |
7969879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 8033814 - 8033780
Alignment:
| Q |
243 |
gaaactcaattatgtacattgaaattggaaaatag |
277 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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|
| T |
8033814 |
gaaactcagttatgtacattgaaattggaaaatag |
8033780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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