View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_14 (Length: 250)
Name: NF1718_low_14
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_14 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 49733908 - 49734152
Alignment:
| Q |
6 |
agaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49733908 |
agaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatg |
49734007 |
T |
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| Q |
106 |
gtagatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734008 |
gtagatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttg |
49734107 |
T |
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| Q |
206 |
tggcttcatctagtagtactattcttggattcttacctatggctc |
250 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
49734108 |
tggcttcatctagtagtaatattcttggattcttaactatggctc |
49734152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 36289245 - 36289031
Alignment:
| Q |
25 |
ttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagcca |
124 |
Q |
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||||||| ||| |||||||| |||||||||||| ||| || ||||| || |||||||||||| ||| || |||||| || || |||| || || |||| |
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| T |
36289245 |
ttgttgatcaatgtttcatgatttcctttctctgtaatgaccccattcttcaccactgcaattaaatctgcacccttaatagtggataacctgtgtgcca |
36289146 |
T |
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| Q |
125 |
ccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtac |
224 |
Q |
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| T |
36289145 |
ctataattgtggttcggtcaaccataactcgatccagtgcatcctgaactactttttcggactcagcatcaagggcactggtggcttcatctagtagtaa |
36289046 |
T |
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| Q |
225 |
tattcttggattctt |
239 |
Q |
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|||| |||||||||| |
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| T |
36289045 |
tatttttggattctt |
36289031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 51216594 - 51216350
Alignment:
| Q |
6 |
agaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatg |
105 |
Q |
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|||||||||||| |||| |||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
51216594 |
agaagcataggtgccacccttgttgatcaatatgtcatgttttcctttctcttcaatcactccatttttaacaactgcaattgaatttgcaccctttatt |
51216495 |
T |
|
| Q |
106 |
gtagatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttg |
205 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
51216494 |
gttgataatctatgagccaccacaatggtggttctgtccaccctcactctatcaagtgcatcttgaaccactttttcagactctgcatcaagggcacttg |
51216395 |
T |
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| Q |
206 |
tggcttcatctagtagtactattcttggattcttacctatggctc |
250 |
Q |
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|||| ||||||||||||| ||||||||| | ||| ||||||||| |
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| T |
51216394 |
tggcctcatctagtagtaatattcttggcctgttaactatggctc |
51216350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 29933829 - 29934028
Alignment:
| Q |
40 |
tcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagccaccacaatggtggttc |
139 |
Q |
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||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| || ||||||||| || |||| |||||||| || | || || |||| |
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| T |
29933829 |
tcatgttttcctttctctgatatcacaccattcttaacgactgcaattaaatctgcaccctttatagtcgataacctatgagctactattattgttgttc |
29933928 |
T |
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| Q |
140 |
tgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtactattcttggattctt |
239 |
Q |
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| T |
29933929 |
ggtccaccataacacagtcaagtgcatcttgcaccactttttcagactcagcatcaagtgcactagttgcttcatctagtaatagtattttcggattctt |
29934028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 51149371 - 51149138
Alignment:
| Q |
6 |
agaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatg |
105 |
Q |
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|||||||||| ||||| ||| | |||||| | |||||| |||||||||||| | ||||| ||||| ||||| ||||| ||| ||| || ||| || || |
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| T |
51149371 |
agaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttgata |
51149272 |
T |
|
| Q |
106 |
gtagatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttg |
205 |
Q |
| |
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|| |||| ||||| ||||| | || || |||| |||||| | | | ||||||||||| || |||||||||||||||||||||||||||||||| | |
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| T |
51149271 |
gtcgataacctatgcgccactattattgtcgttcgctccaccattacacggtcaagtgcatcttgtaccactttttcagactcagcatcaagtgcactag |
51149172 |
T |
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| Q |
206 |
tggcttcatctagtagtactattcttggattctt |
239 |
Q |
| |
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| ||||||||||||| || |||| |||||||||| |
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| T |
51149171 |
ttgcttcatctagtaatagtatttttggattctt |
51149138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 51160210 - 51160001
Alignment:
| Q |
30 |
gagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagccaccaca |
129 |
Q |
| |
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|||||||| |||||| |||||||||||| | ||||| ||||| ||||| ||||| ||| ||| || ||| || || || |||| ||||| ||||| | |
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| T |
51160210 |
gagcaacgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttgatagtcgataacctatgcgccactatt |
51160111 |
T |
|
| Q |
130 |
atggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtactattc |
229 |
Q |
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|| || |||| |||||| | | | ||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||| || |||| |
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| T |
51160110 |
attgtcgttcgctccaccattacacggtcaagtgcatcttgtaccactttttcagactcagcatcaagtgcactagttgcttcatctagtaatagtattt |
51160011 |
T |
|
| Q |
230 |
ttggattctt |
239 |
Q |
| |
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|||||||||| |
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| T |
51160010 |
ttggattctt |
51160001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 51202933 - 51202700
Alignment:
| Q |
6 |
agaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatg |
105 |
Q |
| |
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|||||||||| ||||| ||| | |||||| | |||||| |||||||||||| | ||||| ||||| ||||| ||||| ||| ||| || ||| || || |
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| T |
51202933 |
agaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttgata |
51202834 |
T |
|
| Q |
106 |
gtagatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttg |
205 |
Q |
| |
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|| |||| ||||| ||||| | || || |||| |||||| | | | ||||||||||| || ||||| || ||||||||||||||||||||||| | |
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| T |
51202833 |
gtcgataacctatgcgccactattattgtcgttcgctccaccattacacggtcaagtgcatcttgtaccaccttctcagactcagcatcaagtgcactag |
51202734 |
T |
|
| Q |
206 |
tggcttcatctagtagtactattcttggattctt |
239 |
Q |
| |
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| ||||||||||||| || |||| |||||||||| |
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| T |
51202733 |
ttgcttcatctagtaatagtatttttggattctt |
51202700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 51200032 - 51199978
Alignment:
| Q |
181 |
tcagactcagcatcaagtgcacttgtggcttcatctagtagtactattcttggat |
235 |
Q |
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||||| ||||||||||| |||||||| |||||||| || |||| ||||||||||| |
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| T |
51200032 |
tcagattcagcatcaagcgcacttgtagcttcatcgagaagtaatattcttggat |
51199978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 38566424 - 38566474
Alignment:
| Q |
190 |
gcatcaagtgcacttgtggcttcatctagtagtactattcttggattctta |
240 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
38566424 |
gcatcaagtgcacttgtagcttcatctagaagtaaaattcttggattctta |
38566474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 38525276 - 38525337
Alignment:
| Q |
179 |
tttcagactcagcatcaagtgcacttgtggcttcatctagtagtactattcttggattctta |
240 |
Q |
| |
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||||||| || ||||||||||||||||| |||||||| || |||| ||||||||||||||| |
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| T |
38525276 |
tttcagattctgcatcaagtgcacttgtagcttcatcaagaagtagaattcttggattctta |
38525337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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