View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_23 (Length: 237)
Name: NF1718_low_23
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 56378210 - 56378426
Alignment:
| Q |
18 |
cagttgttgtgaggtacagagaatgcctaaagaaccatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaaca |
117 |
Q |
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| T |
56378210 |
cagttgttgtgaggtacagagaatgcctaaagaaccatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaaca |
56378309 |
T |
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| Q |
118 |
aggaaccattgaagcactcaactgctctgcctgccattgtcacagaaacttccacagaaaagaaatccaaggtgagactgaggatcaggagaactaccac |
217 |
Q |
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| T |
56378310 |
aggaaccattgaagcactcaactgctctgcctgccattgtcacagaaacttccacagaaaagaagtccaaggtgagactgaggatcaggagaactaccac |
56378409 |
T |
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| Q |
218 |
catcactcagccttcaa |
234 |
Q |
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| T |
56378410 |
catcactcagccttcaa |
56378426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 34371386 - 34371250
Alignment:
| Q |
47 |
aagaaccatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctg |
146 |
Q |
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| T |
34371386 |
aagaaccatgcagctacaattggtggcaatgcaattgatggatgtggtgaattcatgccaagtggagaaaatgacacacttgaagctctcaaatgttgtg |
34371287 |
T |
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| Q |
147 |
cctgccattgtcacagaaacttccacagaaaagaaat |
183 |
Q |
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| T |
34371286 |
cttgcaattgccatagaaacttccacagaaaagaaat |
34371250 |
T |
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