View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1718_low_25 (Length: 232)

Name: NF1718_low_25
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1718_low_25
NF1718_low_25
[»] chr2 (4 HSPs)
chr2 (19-232)||(3220422-3220635)
chr2 (21-195)||(12504854-12505032)
chr2 (21-195)||(14680894-14681072)
chr2 (19-195)||(39587452-39587646)
[»] chr1 (4 HSPs)
chr1 (34-199)||(52887853-52888022)
chr1 (21-195)||(52608987-52609165)
chr1 (19-194)||(29887085-29887263)
chr1 (61-165)||(13728701-13728805)
[»] scaffold0014 (2 HSPs)
scaffold0014 (21-195)||(173647-173825)
scaffold0014 (19-195)||(143851-144031)
[»] chr8 (3 HSPs)
chr8 (21-195)||(44198031-44198209)
chr8 (19-195)||(20793571-20793751)
chr8 (19-195)||(23928942-23929122)
[»] chr7 (7 HSPs)
chr7 (21-195)||(48513409-48513587)
chr7 (19-195)||(3718203-3718383)
chr7 (19-195)||(42105277-42105457)
chr7 (19-195)||(48727851-48728031)
chr7 (67-119)||(34529808-34529860)
chr7 (67-119)||(45574882-45574934)
chr7 (70-119)||(17990443-17990492)
[»] chr6 (1 HSPs)
chr6 (21-195)||(29651908-29652086)
[»] chr5 (5 HSPs)
chr5 (21-195)||(36678940-36679118)
chr5 (21-195)||(36662660-36662838)
chr5 (19-195)||(43560279-43560465)
chr5 (42-165)||(23203822-23203945)
chr5 (164-195)||(23198685-23198716)
[»] chr3 (4 HSPs)
chr3 (21-195)||(38327668-38327846)
chr3 (19-195)||(46073482-46073662)
chr3 (19-195)||(55488776-55488956)
chr3 (67-119)||(35029014-35029066)
[»] scaffold1284 (1 HSPs)
scaffold1284 (19-195)||(223-409)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 3220422 - 3220635
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220422 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 3220521  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagaatcttgctct 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3220522 tttagccttcgctgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagattcttgctct 3220621  T
Q  219 tcccatagttagtg 232  Q
    ||||||||||||||    
T  3220622 tcccatagttagtg 3220635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 12504854 - 12505032
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12504854 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 12504953  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  12504954 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 14681072 - 14680894
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14681072 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 14680973  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  14680972 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 39587452 - 39587646
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacctg 104  Q
    ||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| ||||||||||||||    
T  39587452 tatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacctg 39587551  T
Q  105 gattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttgggatgagattcatagttactgcttca 195  Q
    ||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||||||||| |||| |||||||||||    
T  39587552 gattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttgggatgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 52887853 - 52888022
Alignment:
Q  34 gcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgc 133  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |    
T  52887853 gcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcactac 52887952  T
Q  134 tttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttcatgca 199  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||||    
T  52887953 tttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactgcttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 52609165 - 52608987
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52609165 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 52609066  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  52609065 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 29887085 - 29887263
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29887085 tatctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacga 29887183  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 194  Q
    |||  ||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||    
T  29887184 tttcaccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  61 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 160  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  161 cgtgg 165  Q
    |||||    
T  13728801 cgtgg 13728805  T

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Target: scaffold0014 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 173647 - 173825
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  173647 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 173746  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  173747 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 143851 - 144031
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  143851 tatctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctcagcacctggattctttcaacga 143950  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | | |||||| || |||||||| ||||||||||||| |||||| |    ||||||||||||||| ||||||||||||||||    
T  143951 tctcgccttcgctactttcgcggttcgttctccttctccactcttggcaggtttgggatgagatccatagttactgcttca 144031  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 44198031 - 44198209
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44198031 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 44198130  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  44198131 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 20793571 - 20793751
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20793571 tatctcacagatgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacga 20793670  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  20793671 tatcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 23929122 - 23928942
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  23929122 tatctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgaattctttcaacga 23929023  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  23929022 tttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 48513587 - 48513409
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48513587 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 48513488  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  48513487 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 3718383 - 3718203
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3718383 tatctcacagatgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaagattcattgctctgcacctggattctttcaacga 3718284  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| |||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| || |||||||||||||    
T  3718283 ttttgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccacagttactgcttca 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 42105277 - 42105457
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42105277 tatctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacga 42105376  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| |||||  || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  42105377 tttcgccttggctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 48728031 - 48727851
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48728031 tatctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaagattcattgctctgcacctggattctttcaacga 48727932  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  48727931 tttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  67 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 119  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  67 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 119  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  70 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 119  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

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Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 29651908 - 29652086
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29651908 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 29652007  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  29652008 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 29652086  T

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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 36679118 - 36678940
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36679118 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 36679019  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36679018 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36678940  T

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Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 36662660 - 36662838
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36662660 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 36662759  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | | |||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36662760 tcggcttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36662838  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 43560279 - 43560465
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattctttgctctgcacctggattcttt 112  Q
    ||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||||||||||||||||||||||    
T  43560279 tatctcacagatgcagcacacgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattcttt 43560378  T
Q  113 caacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| ||||| |||||| || |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  43560379 caatgatttcgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 43560465  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 23203945 - 23203822
Alignment:
Q  42 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcga 141  Q
    |||||||||| |||| |||| ||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||||  || |||||||||    
T  23203945 agcaggaacggagaatcctgtttacactgaatgggaagaacacgattaattgctctacacctggattctttcaacgatttcgcctttgctactttcgcga 23203846  T
Q  142 ttcgttctccttcgccactcgtgg 165  Q
    ||||||||||||||||||||||||    
T  23203845 ttcgttctccttcgccactcgtgg 23203822  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  164 ggtttgggatgagattcatagttactgcttca 195  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 38327846 - 38327668
Alignment:
Q  21 tctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatt 120  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38327846 tctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatt 38327747  T
Q  121 tagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  38327746 tcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 38327668  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 46073482 - 46073662
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46073482 tatctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacga 46073581  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgtgg----tttgggatgagattcatagttactgcttca 195  Q
    ||| |||||| || ||||||||||||||||||||| ||||||| |||    ||||||||||||| ||||||||||||||||    
T  46073582 tttcgccttcgctactttcgcgattcgttctcctttgccactcatggcagatttgggatgagatccatagttactgcttca 46073662  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 55488776 - 55488956
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacga 118  Q
    ||||||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  55488776 tatctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaagattcattgctctgcacctgggttctttcaacga 55488875  T
Q  119 tttagccttcactgctttcgcgattcgttctccttcgccactcgtggt----ttgggatgagattcatagttactgcttca 195  Q
    ||| |||||| || |||||||| ||||||||||||||||||||||||     |||||||||||| || |||||||||||||    
T  55488876 tttcgccttcgctactttcgcggttcgttctccttcgccactcgtggcaggcttgggatgagatccacagttactgcttca 55488956  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  67 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 119  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

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Target: scaffold1284 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 223 - 409
Alignment:
Q  19 tatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattctttgctctgcacctggattcttt 112  Q
    ||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||||||||||||||||||||||    
T  223 tatctcacagatgcagcacacgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattcttt 322  T
Q  113 caacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 195  Q
    ||| ||||| |||||| || |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  323 caatgatttcgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 409  T

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