View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1718_low_27 (Length: 222)

Name: NF1718_low_27
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1718_low_27
NF1718_low_27
[»] chr1 (29 HSPs)
chr1 (19-207)||(28724593-28724780)
chr1 (21-145)||(22022102-22022226)
chr1 (42-145)||(16756064-16756167)
chr1 (42-144)||(36982338-36982440)
chr1 (21-141)||(17600533-17600653)
chr1 (27-145)||(10840999-10841117)
chr1 (21-130)||(12035546-12035656)
chr1 (21-145)||(9781024-9781143)
chr1 (42-142)||(45806221-45806321)
chr1 (47-134)||(10303107-10303194)
chr1 (42-145)||(35692467-35692570)
chr1 (28-145)||(32534065-32534182)
chr1 (42-115)||(32883626-32883699)
chr1 (47-139)||(29124733-29124825)
chr1 (79-141)||(52912607-52912669)
chr1 (46-143)||(7624859-7624955)
chr1 (89-145)||(14500361-14500417)
chr1 (66-117)||(21774613-21774664)
chr1 (21-136)||(24801372-24801487)
chr1 (42-141)||(25655320-25655419)
chr1 (42-117)||(40019251-40019326)
chr1 (26-113)||(46864105-46864192)
chr1 (25-118)||(13546435-13546528)
chr1 (82-145)||(10750580-10750643)
chr1 (47-117)||(6607755-6607825)
chr1 (25-91)||(7242846-7242912)
chr1 (42-116)||(18428197-18428271)
chr1 (42-115)||(31733747-31733820)
chr1 (48-141)||(36086843-36086936)
[»] chr4 (24 HSPs)
chr4 (21-150)||(31307101-31307230)
chr4 (26-145)||(45994504-45994623)
chr4 (21-145)||(14854587-14854711)
chr4 (26-145)||(38766071-38766190)
chr4 (25-132)||(38844207-38844314)
chr4 (21-145)||(35972325-35972449)
chr4 (21-117)||(46016156-46016255)
chr4 (42-141)||(56447178-56447277)
chr4 (80-145)||(10199198-10199263)
chr4 (44-145)||(11140439-11140540)
chr4 (80-145)||(13686583-13686648)
chr4 (21-145)||(35334133-35334258)
chr4 (21-126)||(46250590-46250698)
chr4 (46-117)||(22189448-22189519)
chr4 (27-145)||(7096078-7096196)
chr4 (66-133)||(32005231-32005298)
chr4 (103-145)||(25768769-25768811)
chr4 (42-144)||(29597456-29597558)
chr4 (48-117)||(2434569-2434638)
chr4 (100-145)||(18069337-18069382)
chr4 (42-139)||(41335730-41335827)
chr4 (21-90)||(51626341-51626410)
chr4 (21-93)||(9012304-9012376)
chr4 (21-117)||(17135107-17135202)
[»] chr7 (23 HSPs)
chr7 (21-145)||(28537372-28537496)
chr7 (21-145)||(29059787-29059911)
chr7 (21-145)||(19477284-19477408)
chr7 (27-133)||(31492097-31492203)
chr7 (27-145)||(8839322-8839440)
chr7 (21-143)||(40099307-40099429)
chr7 (27-145)||(13254142-13254260)
chr7 (21-145)||(21747075-21747198)
chr7 (27-145)||(35707829-35707946)
chr7 (42-145)||(7265369-7265472)
chr7 (40-145)||(7190413-7190518)
chr7 (37-145)||(2657887-2657995)
chr7 (26-145)||(46373655-46373774)
chr7 (83-145)||(42741909-42741971)
chr7 (26-145)||(20207480-20207598)
chr7 (82-141)||(32469916-32469975)
chr7 (48-107)||(46567620-46567679)
chr7 (49-115)||(2871038-2871104)
chr7 (42-144)||(24512609-24512711)
chr7 (46-115)||(40211965-40212034)
chr7 (51-145)||(20142054-20142148)
chr7 (49-110)||(1424590-1424651)
chr7 (42-138)||(27484105-27484201)
[»] chr2 (22 HSPs)
chr2 (19-145)||(12133263-12133389)
chr2 (21-145)||(9438171-9438295)
chr2 (21-144)||(5394380-5394502)
chr2 (42-145)||(42745172-42745275)
chr2 (22-144)||(18105398-18105520)
chr2 (21-145)||(31579264-31579388)
chr2 (29-145)||(44732616-44732732)
chr2 (19-145)||(7020393-7020517)
chr2 (44-145)||(37568785-37568886)
chr2 (19-145)||(993736-993861)
chr2 (33-150)||(17981475-17981592)
chr2 (26-141)||(7157484-7157599)
chr2 (66-145)||(28365931-28366010)
chr2 (21-143)||(17627543-17627665)
chr2 (21-143)||(17672615-17672737)
chr2 (47-118)||(6317733-6317804)
chr2 (21-131)||(14121917-14122029)
chr2 (42-151)||(44752250-44752359)
chr2 (21-117)||(17658472-17658568)
chr2 (44-145)||(19252554-19252651)
chr2 (42-145)||(39401125-39401228)
chr2 (48-145)||(3772605-3772702)
[»] chr5 (14 HSPs)
chr5 (21-145)||(10591909-10592033)
chr5 (35-145)||(30785035-30785145)
chr5 (78-145)||(28023535-28023602)
chr5 (25-145)||(18909340-18909457)
chr5 (21-136)||(22188033-22188146)
chr5 (26-145)||(2804522-2804640)
chr5 (26-137)||(31113324-31113435)
chr5 (22-109)||(35774603-35774690)
chr5 (26-145)||(2798355-2798473)
chr5 (40-139)||(12682623-12682722)
chr5 (21-86)||(5123533-5123598)
chr5 (21-145)||(10795353-10795475)
chr5 (48-101)||(9510766-9510819)
chr5 (48-113)||(23422736-23422801)
[»] chr8 (21 HSPs)
chr8 (21-145)||(2743915-2744039)
chr8 (21-145)||(4125059-4125183)
chr8 (21-145)||(30935986-30936110)
chr8 (21-136)||(13468780-13468895)
chr8 (21-145)||(12958120-12958244)
chr8 (21-142)||(19715761-19715882)
chr8 (26-137)||(30056041-30056152)
chr8 (27-128)||(15682928-15683029)
chr8 (78-145)||(44705654-44705721)
chr8 (21-145)||(36994535-36994659)
chr8 (95-145)||(39086800-39086850)
chr8 (46-135)||(27121810-27121899)
chr8 (42-145)||(4321560-4321663)
chr8 (46-101)||(8878155-8878210)
chr8 (27-137)||(10030948-10031058)
chr8 (42-136)||(11363260-11363353)
chr8 (47-145)||(23981534-23981632)
chr8 (42-115)||(28377670-28377743)
chr8 (24-117)||(44638993-44639086)
chr8 (69-117)||(16701462-16701510)
chr8 (48-136)||(35206991-35207079)
[»] scaffold0182 (1 HSPs)
scaffold0182 (21-126)||(26332-26437)
[»] chr3 (19 HSPs)
chr3 (21-145)||(27763705-27763827)
chr3 (29-145)||(30996008-30996124)
chr3 (42-145)||(48204367-48204470)
chr3 (27-145)||(25224681-25224799)
chr3 (26-145)||(38088617-38088736)
chr3 (23-141)||(22288221-22288339)
chr3 (25-145)||(40294594-40294714)
chr3 (21-145)||(38331110-38331234)
chr3 (66-145)||(14352536-14352615)
chr3 (66-145)||(42514586-42514665)
chr3 (21-99)||(11767138-11767216)
chr3 (42-125)||(48211016-48211099)
chr3 (83-145)||(46604657-46604719)
chr3 (21-148)||(15283054-15283177)
chr3 (26-86)||(20861289-20861349)
chr3 (62-117)||(9651060-9651115)
chr3 (41-104)||(39950235-39950298)
chr3 (47-117)||(54877843-54877913)
chr3 (23-91)||(22288557-22288625)
[»] chr6 (20 HSPs)
chr6 (21-145)||(423637-423761)
chr6 (27-150)||(21910182-21910305)
chr6 (42-145)||(278374-278476)
chr6 (21-136)||(12411139-12411254)
chr6 (66-139)||(21029063-21029136)
chr6 (25-141)||(31107532-31107648)
chr6 (42-117)||(25084044-25084119)
chr6 (26-145)||(31412105-31412223)
chr6 (23-117)||(28099253-28099347)
chr6 (52-145)||(8507109-8507202)
chr6 (21-145)||(15614608-15614732)
chr6 (21-145)||(26477734-26477858)
chr6 (41-113)||(29185307-29185379)
chr6 (27-122)||(5944847-5944942)
chr6 (45-139)||(3237908-3238002)
chr6 (46-144)||(7468600-7468698)
chr6 (52-117)||(9433202-9433267)
chr6 (100-145)||(27432176-27432221)
chr6 (45-90)||(31868636-31868681)
chr6 (21-93)||(12836932-12837004)
[»] scaffold0020 (1 HSPs)
scaffold0020 (66-145)||(167837-167914)
[»] scaffold0009 (1 HSPs)
scaffold0009 (80-143)||(32358-32421)
[»] scaffold0189 (1 HSPs)
scaffold0189 (27-106)||(10973-11052)
[»] scaffold0061 (1 HSPs)
scaffold0061 (100-145)||(36210-36255)
[»] scaffold0017 (1 HSPs)
scaffold0017 (100-145)||(162524-162569)
[»] scaffold0003 (1 HSPs)
scaffold0003 (100-145)||(55142-55187)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 28724780 - 28724593
Alignment:
Q  19 taggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||||||||||||| ||||||  ||| |||||||||||||| | |||||||||| ||| |||| ||||||| ||| ||| ||  |||||||||||||||     
T  28724780 taggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatccaggacttta-ttaagctagaagagac 28724682  T
Q  119 ccgttccatctcatctaaacgctcttgtgtactcaaattgtgttttctatccaacccaaaatatatgacttcaaaattattgttattta 207  Q
     ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28724681 tcgttccatctcatctaagcgctcttgggtactcaaattatgttttctatccaacccaaaatatatgacttcaaaattattgttgttta 28724593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 22022226 - 22022102
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||| |||| |||||||||||||||||||||  || |||||| |||| ||||||||||||||||  ||||| |||||||||||||||| |     
T  22022226 ggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacct 22022127  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||||||||||||    
T  22022126 gttccatctcatctaaacgctcttg 22022102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 16756167 - 16756064
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||||||||||||   |  |||||| |||| |||| |||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16756167 tctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgct 16756068  T
Q  142 cttg 145  Q
    ||||    
T  16756067 cttg 16756064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 36982440 - 36982338
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||||||||||||  |||||||||||| || |||| |||||||||| ||||||||||||| |||||||||| | ||  |||||||||||||| ||    
T  36982440 tctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaactct 36982341  T
Q  142 ctt 144  Q
    |||    
T  36982340 ctt 36982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 17600533 - 17600653
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    ||||||||||||||| ||  || |||  |||||||||||   |||||||||  ||| |||| |||| |||||||||||||||||||||||||||||| ||    
T  17600533 ggactcaaatgggcgtcaaattttccacaagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagaccc 17600632  T
Q  121 gttccatctcatctaaacgct 141  Q
    ||  |||||||||||||||||    
T  17600633 gtgtcatctcatctaaacgct 17600653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 10841117 - 10840999
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    ||||||| |||| ||||||||||||| ||||||  ||||| |||| |||| |||| ||| |||||||| | |||||||||| ||||||||| | ||| ||    
T  10841117 aaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatcttggttaagatagaagagacctgtttca 10841018  T
Q  127 tctcatctaaacgctcttg 145  Q
    |||||||||| ||||||||    
T  10841017 tctcatctaagcgctcttg 10840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 12035656 - 12035546
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagtttt-aatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatc 119  Q
    |||| ||||||||||||||  |||||||||||||||| || | ||||||||| | || |||||||||||||| ||||| |||||||| |||||||||| |    
T  12035656 ggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaaccaaagactttggttaaactagaagagacc 12035557  T
Q  120 cgttccatctc 130  Q
    | |||||||||    
T  12035556 ctttccatctc 12035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 9781024 - 9781143
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||||| |  ||||||||||||||||||   || |||||| |||| ||||||||||||| |||||||||  ||||     |||||||||    
T  9781024 ggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaagaccttaattaa-----aagagatcc 9781118  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||| ||||||||||||||||||||    
T  9781119 gttctatctcatctaaacgctcttg 9781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 45806321 - 45806221
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||||||||| | || |||||| ||||  ||| |||||||| || ||||||||||||| ||||||||| |||||| ||||||||||| ||||    
T  45806321 tctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgct 45806222  T
Q  142 c 142  Q
    |    
T  45806221 c 45806221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 10303194 - 10303107
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatct 134  Q
    |||||||||||||  |||||||||||| |||||||||||||||| |||||| || |||||||||||| ||||  || |||||||||||    
T  10303194 ctaagagttttaacgttgttgcatgtctaaagctggattcgaactcaagactttagttaagctagaatagatttgtgccatctcatct 10303107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 35692570 - 35692467
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||||||||||||  | |||||||| |||| | ||||||||||| |||||| |||||||| |||||| ||| || | ||||||||||||| ||||    
T  35692570 tctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagacccatgccatctcatctaagcgct 35692471  T
Q  142 cttg 145  Q
    ||||    
T  35692470 cttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 32534182 - 32534065
Alignment:
Q  28 aatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccat 127  Q
    ||||||||| | | |||| |||||||||||||  ||||||||||  |||||||| ||| ||| |||| |||||||||||||||||||| | ||||  |||    
T  32534182 aatgggcggtaagctctctctaagagttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagctagaagaaacccgtgtcat 32534083  T
Q  128 ctcatctaaacgctcttg 145  Q
     ||||||||||| |||||    
T  32534082 atcatctaaacgatcttg 32534065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 32883626 - 32883699
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaaga 115  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  32883626 tctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 29124825 - 29124733
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    |||||||||||||   || |||||| |||| ||||||||||||| || |||| ||||||||||||||||||  |||| |||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaacg 29124733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 52912669 - 52912607
Alignment:
Q  79 ctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||||||||| |||||||||||||  ||||| |||||||||||||| ||||||||    
T  52912669 ctggattcgaacccaagatcttggttaagctaatagagacccgttccatctcatttaaacgct 52912607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 7624955 - 7624859
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctct 143  Q
    |||| ||||||| | | |||||||||||||| |||||||| |||||||  | |||||||||||||||| |||   |||||||||||| ||||||||||    
T  7624955 cctacgagttttcagactgttgcatgtccaaggctggatttgaacccataatcttggttaagctagaa-agacttgttccatctcatttaaacgctct 7624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 14500361 - 14500417
Alignment:
Q  89 acccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||| | ||||||    
T  14500361 acccaggaccttggttaagctagaagagacccgttccatcgcatctaagcactcttg 14500417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 21774664 - 21774613
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||||  |||||||||||||||| |||||| |||||||||||||||    
T  21774664 tgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagaga 21774613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 24801487 - 24801372
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||| ||| |   |||||||||||||||||| | || |||||| | || |||||||||||||| | ||| || ||||| ||| |||| ||||    
T  24801487 ggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaaggactttagttaatctataagaaatcc 24801388  T
Q  121 gttccatctcatctaa 136  Q
    ||  ||||||||||||    
T  24801387 gtgtcatctcatctaa 24801372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 25655320 - 25655419
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||| |||||||||||||  ||| |||||| |||| | |  |||||||||||  |||||| ||||| ||||||| ||  |||||||||||||||||||||    
T  25655320 tctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaagatatttgttccatctcatctaaacgct 25655419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 40019326 - 40019251
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||| |||||||||||  ||| ||||| ||||| |||| |||||||||||| |||||| ||||| |||||||||    
T  40019326 tctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagaga 40019251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 46864192 - 46864105
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaa 113  Q
    ||||||| ||||| ||||||||||||| ||||||   |  |||||| ||||||||||||| |||||||| || ||| |||||||||||    
T  46864192 caaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaacccaaaactttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 13546528 - 13546435
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||||||||||| |   ||||| |||||||||||| |||||| |||||  ||  ||||||||||||||| ||| || |||||| ||||||||||    
T  13546528 tcaaatgggcggtaaactctccataagagttttaacattgttacatgtataagactggattcgaacccacgactttagttaagttagaagagat 13546435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 10750643 - 10750580
Alignment:
Q  82 gattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||||||||||||  ||||| |||   ||| |||||||||||| ||||||||    
T  10750643 gattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaagcgctcttg 10750580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 6607755 - 6607825
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||||| |  ||||| |||||||||| | ||||||||| ||||||| || ||||| |||||||||    
T  6607755 ctaagagttttatttatgttgtatgtccaaagttagattcgaactcaagaccatgattaagttagaagaga 6607825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 7242846 - 7242912
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacc 91  Q
    ||||||||| || ||  ||||||||||||||||||  ||| |||||||||||  |||||||||||||    
T  7242846 tcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaagactggattcgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 18428197 - 18428271
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagag 116  Q
    ||||||||| |||||||| | || |||||| |||| | |||||||||| |||  ||||||||||||||| |||||    
T  18428197 tctccctaaaagttttaacactgctgcatgcccaaggttggattcgaatccagaaccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 31733747 - 31733820
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaaga 115  Q
    ||||||||||||||||||   || |||||| | || |||| |||||||||||| || ||||||||| |||||||    
T  31733747 tctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 31733820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 36086936 - 36086843
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||| || ||||||||  |||  |||||||||||| || |||||| ||||| ||| ||||||  | |  |||||||||||||||||    
T  36086936 taagagttttaacatggttgcatgcgcaagactggattcgaactcaggacctttgttaaactaaaagagactcttgtcatctcatctaaacgct 36086843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 31307101 - 31307230
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  31307101 ggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 31307200  T
Q  121 gttccatctcatctaaacgctcttgtgtac 150  Q
    ||||||||||||||||  ||||||| ||||    
T  31307201 gttccatctcatctaagtgctcttgggtac 31307230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 45994623 - 45994504
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    |||||||||| |||| ||||||||||||||||||  |||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||| | |||||    
T  45994623 caaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttcc 45994524  T
Q  126 atctcatctaaacgctcttg 145  Q
    ||||||||||||||||||||    
T  45994523 atctcatctaaacgctcttg 45994504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 14854711 - 14854587
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||| | ||||||||||||||||||   || |||||| |||| ||||||||||||||||  |||||||||||||||||||||| ||    
T  14854711 ggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaacc 14854612  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||| ||||||||    
T  14854611 gttccatctcatctaagcgctcttg 14854587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 38766190 - 38766071
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||||||||||  ||||||||||||||||||   || |||||| |||| ||||||||| |||||| |||||||||||||||||||||||  ||||||    
T  38766190 caaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttcc 38766091  T
Q  126 atctcatctaaacgctcttg 145  Q
    ||||||||||| ||||||||    
T  38766090 atctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 38844207 - 38844314
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttc 124  Q
    |||||||||||||||  ||| ||||||||||||||   ||||||||| |||||||||||||||||| || |||||||||||||||||||||||  |||||    
T  38844207 tcaaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttc 38844306  T
Q  125 catctcat 132  Q
    ||||||||    
T  38844307 catctcat 38844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 35972449 - 35972325
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||||||   ||||||||| ||||||||   || || ||| |||  |||||||||||||||||||||||||||||||||||||||  ||    
T  35972449 ggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattcgaacccaagaccttggttaagctagaagaggccc 35972350  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||| ||||||||    
T  35972349 gttccatctcatctaagcgctcttg 35972325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 46016255 - 46016156
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagac---cttggttaagctagaagaga 117  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| |||   ||||||||||||||||||||    
T  46016255 ggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacctacttggttaagctagaagaga 46016156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 56447178 - 56447277
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||||||||| | || |||||| ||| ||||||||||||||| | ||| |||||||| |||||||| | ||||  |||||| ||||||||||    
T  56447178 tctccctaagagttttaacactgctgcatgcccatagctggattcgaacctaggactttggttaaactagaagaaacccgtgacatctcttctaaacgct 56447277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 10199198 - 10199263
Alignment:
Q  80 tggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||| |||||||||||||||| || |||||| |||||||||||||||||| | ||||||    
T  10199198 tggattcgaacacaagaccttggttaagttataagagacccgttccatctcatctaagcactcttg 10199263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 11140540 - 11140439
Alignment:
Q  44 tccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctct 143  Q
    ||||||||||||||||   || |||||| |||| |||||||||||| ||| ||||||||||||||||||||| | ||||   |||| |||||| ||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaagatagccgtgttatcttatctaagcgctct 11140441  T
Q  144 tg 145  Q
    ||    
T  11140440 tg 11140439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 13686648 - 13686583
Alignment:
Q  80 tggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||||||||||| |||||||||||||| |||||||| || | ||||||||||||| ||||||||    
T  13686648 tggattcgaacccaggaccttggttaagcaagaagagacccatgccatctcatctaagcgctcttg 13686583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 35334133 - 35334258
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||||| |  |||| |||||||||||||   || |||||| |||| |||| || |||||| |  ||||||||||||||||||||||       
T  35334133 ggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaagagactt 35334232  T
Q  121 gttccatctcatctaaa-cgctcttg 145  Q
    ||||||||||||||||| ||||||||    
T  35334233 gttccatctcatctaaagcgctcttg 35334258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 46250590 - 46250698
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagac---cttggttaagctagaagaga 117  Q
    |||| ||||||||||||||| | ||| |||||||||||| | || |||||| ||||  ||||||||||||| | |||   |||||||||||||||||||     
T  46250590 ggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgcccaagactggattcgaacctaggacctacttggttaagctagaagagc 46250689  T
Q  118 tccgttcca 126  Q
     ||||||||    
T  46250690 cccgttcca 46250698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 22189448 - 22189519
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    ||||||||||||||| ||| ||||||  ||| | ||||||||||| |  |||||||||||||||||||||||    
T  22189448 cctaagagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagctagaagaga 22189519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 7096196 - 7096078
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||| | | ||||||||||||||||||  ||| |||||   |||  ||| |||| ||||||| |||||||||||||||||||| | | ||  ||    
T  7096196 aaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtca 7096097  T
Q  127 tctcatctaaacgctcttg 145  Q
    |||||||||| || |||||    
T  7096096 tctcatctaagcgttcttg 7096078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 32005231 - 32005298
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatc 133  Q
    |||||| ||||||||| |||||||| || ||| ||||||||| ||||||||| |  ||||||||||||    
T  32005231 tgcatgcccaaagctgaattcgaactcaggactttggttaagttagaagagacctattccatctcatc 32005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 25768769 - 25768811
Alignment:
Q  103 ttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||| |||||||||| |||||||||||||||||| ||||||||    
T  25768769 ttaaactagaagagacccgttccatctcatctaagcgctcttg 25768811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 29597558 - 29597456
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||| |||||||||||||  |||||||||| ||||  ||| ||| |||| ||||||||| |||||| || || | |  |||  |||||||||||||||||    
T  29597558 tctctctaagagttttaacgttgttgcatgcccaagactgaatttgaactcaagacctttgttaagttaaaaaaaactcgtgtcatctcatctaaacgct 29597459  T
Q  142 ctt 144  Q
    |||    
T  29597458 ctt 29597456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 2434638 - 2434569
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    ||||||||||||  |||||| |||||||| |||||||||||||| || |  ||||||||| | |||||||    
T  2434638 taagagttttaacgttgttgtatgtccaaggctggattcgaacctaaaattttggttaagattgaagaga 2434569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 18069337 - 18069382
Alignment:
Q  100 tggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  18069337 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttg 18069382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 41335730 - 41335827
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    |||| |||||| ||||||  ||| ||||||||||| ||| |||||||| |||  |  ||||||||| || |||||||||||| ||||| || ||||||    
T  41335730 tctctctaagatttttaacgttgctgcatgtccaatgctagattcgaatccataattttggttaagttaaaagagatccgttacatctaatttaaacg 41335827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 51626341 - 51626410
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaac 90  Q
    |||| ||||||| ||||||  ||||||||| |||||||| | || |||||| |||| |||||||||||||    
T  51626341 ggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 9012376 - 9012304
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaaccca 93  Q
    |||| ||| ||||||||| | ||||||||||||||| || | || |||||| |||| ||| ||||||||||||    
T  9012376 ggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctagattcgaaccca 9012304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 17135202 - 17135107
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    ||||||||||| ||||||   ||||||||||||||||||   || ||||||  ||| |||||||||||| | | ||| ||| |||||||||||||||    
T  17135202 ggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaa-ctaggactttgattaagctagaagaga 17135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 28537496 - 28537372
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| ||||||||||||||||||  |||||||||| |||| ||||||||||||||||| |||||| ||||| ||||||||| ||    
T  28537496 ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagaccc 28537397  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||| ||||||||    
T  28537396 gttccatctcatctaagcgctcttg 28537372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 29059911 - 29059787
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  29059911 ggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 29059812  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||  |||||||    
T  29059811 gttccatctcatctaagtgctcttg 29059787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 19477284 - 19477408
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||| ||||| | |||||||||||||||||| | ||||||||| |||| ||||||||| ||||||  |||||||||||||||||||||| ||    
T  19477284 ggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagaccc 19477383  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||||||||||||    
T  19477384 gttccatctcatctaaacgctcttg 19477408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 31492203 - 31492097
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  31492203 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttcca 31492104  T
Q  127 tctcatc 133  Q
    |||||||    
T  31492103 tctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 8839322 - 8839440
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||| |||||||| |||||||||||||||||||   || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||    
T  8839322 aaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttca 8839421  T
Q  127 tctcatctaaacgctcttg 145  Q
    |||||||||| ||||||||    
T  8839422 tctcatctaagcgctcttg 8839440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 40099307 - 40099429
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||||||||| | |||||||||||||||||||  || ||||| ||||||||||||||||||  || || ||| |||||||||||||||| ||    
T  40099307 ggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagaccc 40099406  T
Q  121 gttccatctcatctaaacgctct 143  Q
    |||||||||||||||| ||||||    
T  40099407 gttccatctcatctaagcgctct 40099429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 13254142 - 13254260
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||||||| ||||||||||||||| ||   || |||||| | || ||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  13254142 aaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttcca 13254241  T
Q  127 tctcatctaaacgctcttg 145  Q
    |||||||||| ||||||||    
T  13254242 tctcatctaagcgctcttg 13254260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 21747075 - 21747198
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||| || ||| ||||||||||||||||||   ||  ||||| | |||||||||||||| |||| ||||||||||||| ||||||||| ||    
T  21747075 ggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcctaaagctggattcga-cccaggaccttggttaagttagaagagaccc 21747173  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||||||||||||    
T  21747174 gttccatctcatctaaacgctcttg 21747198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 35707946 - 35707829
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    ||||||| |||| ||||||||||||| ||||||  ||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||| | |||| |    
T  35707946 aaatgggaggcaagttctccctaagaattttaacgttgttgcatgtccaaagttggattcgaa-ccagaaccttggttaaactagaagagacctgttcaa 35707848  T
Q  127 tctcatctaaacgctcttg 145  Q
    ||| |||||||||||||||    
T  35707847 tctaatctaaacgctcttg 35707829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 7265369 - 7265472
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||||||||| || | |||||| ||||  || ||| ||||||||| || ||||||||||||||||||| ||||  |||||||| ||||||||    
T  7265369 tctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaagagacccgtgtcatctcatataaacgct 7265468  T
Q  142 cttg 145  Q
    ||||    
T  7265469 cttg 7265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 7190413 - 7190518
Alignment:
Q  40 gttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    ||||||||||| |||||||| |  | |||||| |||| |||| |||| ||| ||  |||||||||||||||||||||||   ||||||||||||||||||    
T  7190413 gttctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacg 7190512  T
Q  140 ctcttg 145  Q
    ||||||    
T  7190513 ctcttg 7190518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 2657887 - 2657995
Alignment:
Q  37 caggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaa 136  Q
    |||| ||||| ||||||||||||  ||| |||||| |||| |||| ||| |||| || | ||||| ||||| |||||||||  |||||||||||||||||    
T  2657887 caggctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaa 2657986  T
Q  137 acgctcttg 145  Q
     ||||||||    
T  2657987 gcgctcttg 2657995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 46373774 - 46373655
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||| ||||||| | |||||||| |||||||||   ||||| ||| ||||  ||||||||||||||| || |||| ||||||||||||||| |||   |    
T  46373774 caaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttgcttaagctagaagagacccgcgtc 46373675  T
Q  126 atctcatctaaacgctcttg 145  Q
    |||||||||||  |||||||    
T  46373674 atctcatctaagagctcttg 46373655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 42741909 - 42741971
Alignment:
Q  83 attcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||| | ||| ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  42741909 attcgaacctaggacattggttaagatagaagagacctgttccatctcatctaaacgctcttg 42741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 20207598 - 20207480
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    |||||| |||||| | ||||| ||||||||||||  ||||| |||| | || |||| ||| |||||||| | ||| |||||||||||||| |||| |  |    
T  20207598 caaatgcgcggcaagctctccttaagagttttaacgttgttacatgcctaaggctgaattagaacccaa-atcttagttaagctagaagaaatccatatc 20207500  T
Q  126 atctcatctaaacgctcttg 145  Q
    ||||||||||| ||||||||    
T  20207499 atctcatctaagcgctcttg 20207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 32469975 - 32469916
Alignment:
Q  82 gattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||| ||| | |||| |||||||||||||||  ||||||||||||||||||||||    
T  32469975 gattcgaactcaaaatcttgattaagctagaagagactcgttccatctcatctaaacgct 32469916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 46567620 - 46567679
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaag 107  Q
    |||||||||||||||||||||||||  |||| || |||| |||||||||||||| |||||    
T  46567620 taagagttttaatattgttgcatgtttaaagttgtattcaaacccaagaccttgattaag 46567679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 2871038 - 2871104
Alignment:
Q  49 aagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaaga 115  Q
    ||||||||||| ||||||||||||| || | ||||||| ||||||  |||||||||||| |||||||    
T  2871038 aagagttttaacattgttgcatgtctaaggatggattcaaacccagaaccttggttaagttagaaga 2871104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 24512711 - 24512609
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||| |||||||||||  |||||| |||||||| | || |||||||  || ||| |||||||| |||||||||| ||||  ||| |||||||| ||||    
T  24512711 tctccccaagagttttaacgttgttggatgtccaaggttgtattcgaattcaggacattggttaaactagaagagacccgtgtcatttcatctaatcgct 24512612  T
Q  142 ctt 144  Q
    |||    
T  24512611 ctt 24512609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 40212034 - 40211965
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaaga 115  Q
    ||||||||||||||  |||||||||| ||||  ||||||| ||||||| ||||||| |||||||| ||||    
T  40212034 cctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaaga 40211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 20142148 - 20142054
Alignment:
Q  51 gagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||  |||| | ||||||||| | | |||||||||| || ||||| |||||| ||||| | | ||||  |||||||||||||||||||||    
T  20142148 gagttttagcattgcttcatgtccaatgttagattcgaacctaaaaccttagttaagttagaataaaaccgtgtcatctcatctaaacgctcttg 20142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 1424651 - 1424590
Alignment:
Q  49 aagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagcta 110  Q
    ||||||||||| | | |||| |||||||   ||||||||||||||| |||||||||||||||    
T  1424651 aagagttttaacactattgcttgtccaataatggattcgaacccaacaccttggttaagcta 1424590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 27484105 - 27484201
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaac 138  Q
    |||||| |||||||||||   || |||||| |||  ||||||||  ||| || |||||||||||||||||||||||   ||  ||||||||||||||    
T  27484105 tctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaaac 27484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 12133263 - 12133389
Alignment:
Q  19 taggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||||| ||||||| ||||||| ||||||||||||||||||  ||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||     
T  12133263 taggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagac 12133362  T
Q  119 ccgttccatctcatctaaacgctcttg 145  Q
     ||||||||||||||||| ||||||||    
T  12133363 tcgttccatctcatctaagcgctcttg 12133389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 9438171 - 9438295
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||||||| ||||||||||||||   || |||||| |||| |||||||||||||| ||||| |||||||||||| ||||||| |    
T  9438171 ggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaaccaaagactttggttaagctaaaagagattc 9438270  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||||||||||||    
T  9438271 gttccatctcatctaaacgctcttg 9438295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 5394502 - 5394380
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| |||||||||||||||||| || | |||||| |||| |||||||||||||||| |||||||||||||||||||||||  |    
T  5394502 ggacccaaatgggcggcaggctctccctaagagttttaacat-gctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactc 5394404  T
Q  121 gttccatctcatctaaacgctctt 144  Q
    |||||||||||||||| |||||||    
T  5394403 gttccatctcatctaagcgctctt 5394380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 42745172 - 42745275
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  42745172 tctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcgct 42745271  T
Q  142 cttg 145  Q
    ||||    
T  42745272 cttg 42745275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 18105398 - 18105520
Alignment:
Q  22 gactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccg 121  Q
    ||||||||||||||||||| ||||| ||||| ||||||  |||||||||| |||| |||||||||||||||| |||||||||||||||||||||||  ||    
T  18105398 gactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcg 18105497  T
Q  122 ttccatctcatctaaacgctctt 144  Q
    ||||||||||| ||| |||||||    
T  18105498 ttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 31579264 - 31579388
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    ||||| |||||||||||||  ||||||||| |||||||| | ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||    
T  31579264 ggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctagaagagaccc 31579363  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||| ||||||||||||  |||||||    
T  31579364 gttacatctcatctaagtgctcttg 31579388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 44732616 - 44732732
Alignment:
Q  29 atgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatc 128  Q
    |||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatc 44732715  T
Q  129 tcatctaaacgctcttg 145  Q
    ||||||||  |||||||    
T  44732716 tcatctaagtgctcttg 44732732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 7020393 - 7020517
Alignment:
Q  19 taggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||||| ||||||||||||| ||||||||||||| |||||| |||| |||||| | |||  || |||||||  ||||||||||||||||||||||||||     
T  7020393 taggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcctaaat-tgaattcgaattcaagaccttggttaagctagaagagac 7020490  T
Q  119 ccgttccatctcatctaaacgctcttg 145  Q
    |||| | ||||||||||||||||||||    
T  7020491 ccgtgcaatctcatctaaacgctcttg 7020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 37568785 - 37568886
Alignment:
Q  44 tccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctct 143  Q
    |||||||||||||||| | || |||||| | || |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||  |||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctct 37568884  T
Q  144 tg 145  Q
    ||    
T  37568885 tg 37568886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 993861 - 993736
Alignment:
Q  19 taggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||||| ||||||||||||| |||||||||||||||||||   | | |||||| |||| | || ||||||||||| |||||||||||||||| ||||||     
T  993861 taggacccaaatgggcggcaagttctccctaagagttttacgct-gctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagac 993763  T
Q  119 ccgttccatctcatctaaacgctcttg 145  Q
     |||  |||||||||||| ||||||||    
T  993762 acgtgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 17981592 - 17981475
Alignment:
Q  33 gcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcat 132  Q
    |||||| | ||||||||||||||||||| |||||||||| ||||  |||||||  ||  || ||| |||||||||||||||||||  |||||||||||||    
T  17981592 gcggcaagctctccctaagagttttaatgttgttgcatgcccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcat 17981493  T
Q  133 ctaaacgctcttgtgtac 150  Q
    |||| |||| ||| ||||    
T  17981492 ctaagcgctattgggtac 17981475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 7157599 - 7157484
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||| ||||||||| ||||||||||||||||||  ||| |||||| |||| ||| |||||||||| | || |||||||||| |||||||||  |||||     
T  7157599 caaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttct 7157500  T
Q  126 atctcatctaaacgct 141  Q
    ||| ||||||| ||||    
T  7157499 atcccatctaagcgct 7157484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 28366010 - 28365931
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||| |||| |||| |||||||| || ||||||||||||| |||||||||  ||||||||||||||||| ||||||||    
T  28366010 tgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttg 28365931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 17627665 - 17627543
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||||| |||   | ||||||||| ||||||  |||||||||| |||| ||||||||||||| || ||||||||||||  |||||||||  |    
T  17627665 ggactcaaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagacgc 17627566  T
Q  121 gttccatctcatctaaacgctct 143  Q
    ||  |||||| ||||| ||||||    
T  17627565 gtgtcatctcgtctaagcgctct 17627543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 17672737 - 17672615
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||||| |||   ||||||||||| ||||||  |||||||||| |||| | ||||||||||| || ||||||||||||  | |||||||  |    
T  17672737 ggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaaatttgaagagacgc 17672638  T
Q  121 gttccatctcatctaaacgctct 143  Q
    ||  |||||| ||||| ||||||    
T  17672637 gtgtcatctcgtctaagcgctct 17672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 6317733 - 6317804
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagat 118  Q
    |||| ||||||||  ||||||||||||||||||| ||||  |||||| ||| |||||||||||| |||||||    
T  6317733 ctaaaagttttaactttgttgcatgtccaaagctcgatttaaacccatgacattggttaagctaaaagagat 6317804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 14121917 - 14122029
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctag--aagagat 118  Q
    |||||||||||||||||| |||||| |||||| ||||||  ||| ||||||| |||  ||| |||| ||| || |||| |||||| |||||  || ||||    
T  14121917 ggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaattcaaactcaggaccctggttaggctagaaaaaagat 14122016  T
Q  119 ccgttccatctca 131  Q
    ||||| |||||||    
T  14122017 ccgtttcatctca 14122029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 44752250 - 44752359
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||| |||||||||||  |||||||||| ||||  || |||||||||| | ||  |||||||||||||||||||   ||  |||||||||||| |||     
T  44752250 tctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagctagaagagacttgtatcatctcatctaagcgca 44752349  T
Q  142 cttgtgtact 151  Q
    |||| |||||    
T  44752350 cttgggtact 44752359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 17658568 - 17658472
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||||||| |||   ||||||||||| ||||||  |||||||||| |||| ||| ||||||||  || || |||||||||  |||||||||    
T  17658568 ggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaattcaggatcttggttaaattagaagaga 17658472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 19252554 - 19252651
Alignment:
Q  44 tccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctct 143  Q
    ||||| ||||||||||  ||| |||||| ||||||||    |||||| || ||  |||||||||||| |||||| ||||  |||||||||||||||||||    
T  19252554 tcccttagagttttaaggttgctgcatgaccaaagct----tcgaactcaggagtttggttaagctaaaagagacccgtatcatctcatctaaacgctct 19252649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 39401125 - 39401228
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||| |||||||||  |  |||||| |||| |||| ||||||| |||||| |||||||||| || || |||  |||  ||||||||||||||| |    
T  39401125 tctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaatccaagatcttggttaagttaaaaaagactcgtgtcatctcatctaaacgtt 39401224  T
Q  142 cttg 145  Q
    ||||    
T  39401225 cttg 39401228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 3772605 - 3772702
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||| ||||| |||||||||||| |||   |||||||||||  | ||||||||||||  |||||||||   ||  |||||||||||| ||||||||    
T  3772605 taagaggtttaacattgttgcatgttcaagattggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaagcgctcttg 3772702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 10592033 - 10591909
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||||||||||  |||||||||||||||||| | || |||||| |||| |||||||||||||||| |||||||||||| |||||||||| ||    
T  10592033 ggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaagagaccc 10591934  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||  |||||||    
T  10591933 gttccatctcatctaagtgctcttg 10591909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 30785035 - 30785145
Alignment:
Q  35 ggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatct 134  Q
    ||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||    
T  30785035 ggcagattctccctaagagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatct 30785134  T
Q  135 aaacgctcttg 145  Q
    ||| |||||||    
T  30785135 aaatgctcttg 30785145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 28023535 - 28023602
Alignment:
Q  78 gctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28023535 gctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaagcgctcttg 28023602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 18909340 - 18909457
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttc 124  Q
    ||||||| ||||||  ||||||||||||||||||| | || |||||  |||| |||||||||||||| | ||||||| |||||||||||   | ||||||    
T  18909340 tcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttgattaagctagaa---acccgttc 18909436  T
Q  125 catctcatctaaacgctcttg 145  Q
     ||||||||||| ||||||||    
T  18909437 tatctcatctaagcgctcttg 18909457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 22188033 - 22188146
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||| ||||||||  |||||  |||||||||||   ||||| ||| |||| ||||||||| ||||||| |||||||||||| |||||||||| |    
T  22188033 ggacccaaataggcggcagactctcc--aagagttttaacgctgttgtatgcccaaggctggattcaaacccaataccttggttaagttagaagagattc 22188130  T
Q  121 gttccatctcatctaa 136  Q
    |||| |||||||||||    
T  22188131 gttcaatctcatctaa 22188146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 2804522 - 2804640
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||||||| | | ||||||||| ||||||||   || ||||||  ||| | ||||||||||||||| |||||||||||||||||||| | ||||| |    
T  2804522 caaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaaga-aaccgtttc 2804620  T
Q  126 atctcatctaaacgctcttg 145  Q
    |||||||||||  |||||||    
T  2804621 atctcatctaactgctcttg 2804640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 31113435 - 31113324
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||||||| ||| |||||||||||||||||| | || |||||| |||| |||| ||||||||| |  |||||  |||||||| || ||| ||||| |    
T  31113435 caaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttc 31113336  T
Q  126 atctcatctaaa 137  Q
    ||||||||||||    
T  31113335 atctcatctaaa 31113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 35774690 - 35774603
Alignment:
Q  22 gactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagct 109  Q
    |||||||||| |||||| | |||||||||| ||||||| |||||||||||||||| |||  |||||||| |||||| || ||||||||    
T  35774690 gactcaaatgtgcggcaagctctccctaagtgttttaacattgttgcatgtccaaggctaaattcgaactcaagactttagttaagct 35774603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 2798355 - 2798473
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||||||| | | ||||||||| ||||||||   || ||||||  ||| | ||||||||||||||  |||||||||||||||||||| | ||||| |    
T  2798355 caaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaaga-aaccgtttc 2798453  T
Q  126 atctcatctaaacgctcttg 145  Q
    |||||||||||  |||||||    
T  2798454 atctcatctaactgctcttg 2798473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 12682722 - 12682623
Alignment:
Q  40 gttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    |||||||| |||||||||||  ||||||||||  ||| ||||||||||||| ||  || ||| |||||||||||||||  |||| |||||||| ||||||    
T  12682722 gttctcccgaagagttttaacgttgttgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcatttaaacg 12682623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 5123533 - 5123598
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattc 86  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| |||| ||||    
T  5123533 ggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 10795353 - 10795475
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||||||  |||||| | |||||||||||  || | |||| | || |||||||| ||||  | ||||||||||||||  ||||||||||    
T  10795353 ggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgcctaaggctggatttgaacttaggaccttggttaagc--gaagagatcc 10795450  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||  |||||||||||| || |||||    
T  10795451 gtatcatctcatctaagcgttcttg 10795475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 9510819 - 9510766
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttg 101  Q
    ||||||||||||| ||| || || ||||||| || |||||||||||||||||||    
T  9510819 taagagttttaatgttgatgaatttccaaagttgtattcgaacccaagaccttg 9510766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 23422801 - 23422736
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaa 113  Q
    ||||||||||||  ||| |||||| ||||| || |||| || | ||||||||||||||||||||||    
T  23422801 taagagttttaactttgctgcatgcccaaaactagatttgatctcaagaccttggttaagctagaa 23422736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 2744039 - 2743915
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||| || || | |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  2744039 ggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 2743940  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||| |||||||    
T  2743939 gttccatctcatctaaatgctcttg 2743915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 4125059 - 4125183
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| ||| |||||||||||| ||| ||||||||||||||||||| ||    
T  4125059 ggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctagaagagaccc 4125158  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||  |||||||    
T  4125159 gttccatctcatctaagtgctcttg 4125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 30936110 - 30935986
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| ||||||||||||||||||  ||| ||||||   || ||||||||||||| || ||||||||||||| ||||||||| ||    
T  30936110 ggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagagaccc 30936011  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||  |||||||    
T  30936010 gttccatctcatctaagtgctcttg 30935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 13468780 - 13468895
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||||||||||  |||| |||||||||||||   || | |||| |||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  13468780 ggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 13468879  T
Q  121 gttccatctcatctaa 136  Q
    ||||||||| ||||||    
T  13468880 gttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 12958120 - 12958244
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||| |||| ||||||||||||||||||   || |||||| |||| ||||||||| |||||| |||||||||||||||||||||||       
T  12958120 ggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttggttaagctagaagagacta 12958219  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||| | ||||||    
T  12958220 gttccatctcatctaagcactcttg 12958244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 19715761 - 19715882
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||| | ||||||| ||||||||||   || |||||| |||| |||||||||||||||| ||||||||||||||||||| |||       
T  19715761 ggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagacat 19715860  T
Q  121 gttccatctcatctaaacgctc 142  Q
    |||||||||||||||| |||||    
T  19715861 gttccatctcatctaagcgctc 19715882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 30056041 - 30056152
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||| ||||||| |||||||||||||||||||  || |||||| | || |||||||| ||||||| |||||| ||||||||||||||||   |||||    
T  30056041 caaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttcgttaagctagaagagacatgttcc 30056140  T
Q  126 atctcatctaaa 137  Q
    ||||||||||||    
T  30056141 atctcatctaaa 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 15683029 - 15682928
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||||||| ||||||||||||||||||   || |||||| |||| ||||||||||||| || ||||||| |||||||||||||||  |||||||    
T  15683029 aaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctagaagagactcgttcca 15682930  T
Q  127 tc 128  Q
    ||    
T  15682929 tc 15682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 44705721 - 44705654
Alignment:
Q  78 gctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||    
T  44705721 gctggattcgaacccaagaccttggttaaactagaagagacctgttccatcccatctaaacgctcttg 44705654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 36994535 - 36994659
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||| |||   ||||| ||||||||||||   || ||||||||||| |||||||||||||||| |||||||||||| ||||||||||       
T  36994535 ggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaagagacat 36994634  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    || |||||| |||||| ||||||||    
T  36994635 gtgccatcttatctaagcgctcttg 36994659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 39086850 - 39086800
Alignment:
Q  95 gaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  39086850 gaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttg 39086800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 27121810 - 27121899
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatcta 135  Q
    ||||| |||||||| | |||||||||   |||||||||||||||||||  || ||||||||||||||||||| ||||   ||||||||||    
T  27121810 cctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 4321560 - 4321663
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||||||||||||||||  || ||||||||| ||  |||||||| ||||||  |||||  ||||||||||||| |||  |  |||||||||||||| ||    
T  4321560 tctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaaccct 4321659  T
Q  142 cttg 145  Q
    ||||    
T  4321660 cttg 4321663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 8878155 - 8878210
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttg 101  Q
    ||||||||||||||  |||||||||| | |||||||||||||||||| ||||||||    
T  8878155 cctaagagttttaacgttgttgcatgcctaaagctggattcgaacccgagaccttg 8878210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 10031058 - 10030948
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||||| | ||||||||||||||||||  |||||| |||||||| ||  ||||||||| ||  |  ||||||||| ||||||| |  |||| ||    
T  10031058 aaatgggcggcaagctctccctaagagttttaacgttgttggatgtccaatgcaagattcgaactcagaattttggttaagttagaagaaactcgtttca 10030959  T
Q  127 tctcatctaaa 137  Q
    ||| |||||||    
T  10030958 tcttatctaaa 10030948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 11363353 - 11363260
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaa 136  Q
    |||||||| |||||||||   |||||||||| ||| |||| |||| ||| ||| || ||||||||| ||||||||||  ||| ||||||||||||    
T  11363353 tctccctaggagttttaacgatgttgcatgttcaaggctgaattcaaactcaatac-ttggttaagttagaagagatttgtttcatctcatctaa 11363260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 23981534 - 23981632
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||||||||||  ||  |||||||||||||||| ||||||| |||  ||| | ||||||||| ||||||  |||  ||||| |||||| ||||||||    
T  23981534 ctaagagttttaacgttcctgcatgtccaaagctgaattcgaatccagaaccctagttaagctaaaagagactcgtgtcatctgatctaagcgctcttg 23981632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 28377743 - 28377670
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaaga 115  Q
    ||||||||||| ||||||| ||| |||||| | || ||||||||||||| || ||| ||| |||||||| ||||    
T  28377743 tctccctaagaattttaatgttgctgcatgcctaatgctggattcgaactcatgactttgattaagctaaaaga 28377670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 44639086 - 44638993
Alignment:
Q  24 ctcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||| ||||||   ||||||||||||||||||  ||||||||||  ||| | ||||||| ||  || ||||||| ||||| |||||||||    
T  44639086 ctcaaatgtgcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggaccttgattaagttagaagaga 44638993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 16701462 - 16701510
Alignment:
Q  69 atgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||| ||||||||||||||||  ||||| |||||| |||||||||    
T  16701462 atgtccaaggctggattcgaacccagaaccttagttaagatagaagaga 16701510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 35207079 - 35206991
Alignment:
Q  48 taagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaa 136  Q
    ||||||||||||   || ||||||||||| | |  |||||||||||  | |||||||||| ||||||||| | ||| ||||||||||||    
T  35207079 taagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaa 35206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 26437 - 26332
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||||| |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||    
T  26437 ggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 26338  T
Q  121 gttcca 126  Q
    ||||||    
T  26337 gttcca 26332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 27763827 - 27763705
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||| ||||||  |||||||||||||||||| | ||||| ||| |||| |||||||||||||||| |||||||||||||||||  |||| ||    
T  27763827 ggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaacccaggaccttggttaagctag--gagaccc 27763730  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||| ||||||||||| ||||||||    
T  27763729 gttctatctcatctaagcgctcttg 27763705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 30996008 - 30996124
Alignment:
Q  29 atgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatc 128  Q
    |||||||||||  ||||||||||||||||||   ||||||||| |||| |  ||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  30996008 atgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatc 30996107  T
Q  129 tcatctaaacgctcttg 145  Q
    |||||||| ||||||||    
T  30996108 tcatctaagcgctcttg 30996124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 48204367 - 48204470
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    |||||||||| |||||||  ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||    
T  48204367 tctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcact 48204466  T
Q  142 cttg 145  Q
    ||||    
T  48204467 cttg 48204470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 25224799 - 25224681
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    |||||||||||| ||||||| ||||||||||||   || |||||  ||||| || |||||||||||| ||||||||||||||||||||||| ||||| ||    
T  25224799 aaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttca 25224700  T
Q  127 tctcatctaaacgctcttg 145  Q
    |||||||||| ||||||||    
T  25224699 tctcatctaagcgctcttg 25224681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 38088736 - 38088617
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||| ||||||| ||||||||||||||||||||   |  |||||| |||||||||||||||||||    |||||||||||||||||||||| ||||| |    
T  38088736 caaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttc 38088637  T
Q  126 atctcatctaaacgctcttg 145  Q
    ||||||||||| ||||||||    
T  38088636 atctcatctaagcgctcttg 38088617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 22288339 - 22288221
Alignment:
Q  23 actcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgt 122  Q
    |||||||||| || || |||||||||||||||||||| |||||||||||| ||| |||| |||||||| || ||| ||||||||| |||||||||| | |    
T  22288339 actcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagttagaagagattcat 22288240  T
Q  123 tccatctcatctaaacgct 141  Q
      |||||||||||| ||||    
T  22288239 gtcatctcatctaagcgct 22288221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 40294714 - 40294594
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttc 124  Q
    ||||||| |||||| | | |||||||||||||||| |||||||||| ||||| ||||||||||||| || ||||||| ||||| |||| ||||  |||      
T  40294714 tcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactcaggaccttgattaaggtagaggagactcgtgt 40294615  T
Q  125 catctcatctaaacgctcttg 145  Q
    |||||||||||||| ||||||    
T  40294614 catctcatctaaacactcttg 40294594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 38331234 - 38331110
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| ||||||||||||| | |||| |||||||||||||   || ||||||  ||||| ||||||| ||| || ||| ||||||||| ||||||||| ||    
T  38331234 ggacccaaatgggcggcaagctctctctaagagttttaacgctgctgcatgctcaaagttggattcaaactcaggacattggttaagttagaagagaccc 38331135  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    | |||||||||||||| ||||||||    
T  38331134 gatccatctcatctaagcgctcttg 38331110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 14352615 - 14352536
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||| |||||||||||||| || | ||||||||||||||||||||   |||||||||||||||| ||||||||    
T  14352615 tgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaagcgctcttg 14352536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 42514665 - 42514586
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||| |||||| |||||||||||||||||| || ||||||||||||||||  |||| |||||||||||| ||||||||    
T  42514665 tgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcatctaagcgctcttg 42514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 11767216 - 11767138
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagacct 99  Q
    |||||||||||||||||| |  ||  ||||||||||||||||||||||||| |||| | | |||||||||||| |||||    
T  11767216 ggactcaaatgggcggcaagcacttgctaagagttttaatattgttgcatgcccaaggatagattcgaacccaggacct 11767138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 48211016 - 48211099
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||| ||||||||||||  ||| ||||||  ||| |||||||||||||| || |||||| ||||| ||||||||| |||||||    
T  48211016 tctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgttcc 48211099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 46604657 - 46604719
Alignment:
Q  83 attcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||||||||  |||||||||||| || ||||||  ||||||||||||||||| ||||||||    
T  46604657 attcgaacccagaaccttggttaagttataagagactcgttccatctcatctaagcgctcttg 46604719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 15283177 - 15283054
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||| |||||||||||||   | ||| |||||||||||| || | |||||| |||   |||||||||||||||   |||| |||||| |||||||||  |    
T  15283177 ggacccaaatgggcggcaatctttccataagagttttaagat-gctgcatgcccatgactggattcgaaccca---ccttagttaagttagaagagactc 15283082  T
Q  121 gttccatctcatctaaacgctcttgtgt 148  Q
    ||  ||||||||||||||||||||||||    
T  15283081 gtatcatctcatctaaacgctcttgtgt 15283054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 20861349 - 20861289
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattc 86  Q
    ||||||||||||||| ||||||||||||||||||   || |||||| |||| |||||||||    
T  20861349 caaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 9651115 - 9651060
Alignment:
Q  62 ttgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    ||||||||||||||| |||| |||||||||||||||| || ||||  |||||||||    
T  9651115 ttgttgcatgtccaaggctgaattcgaacccaagaccatgattaaattagaagaga 9651060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 39950298 - 39950235
Alignment:
Q  41 ttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggtt 104  Q
    |||||||||| | ||||||   || |||||||||||| |||||||| |||||||||||||||||    
T  39950298 ttctccctaaaaattttaacgctgctgcatgtccaaaactggattctaacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 54877913 - 54877843
Alignment:
Q  47 ctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||||||  |||||| ||| |||| |||| |||| ||| ||| |||||||||||| |||||||||    
T  54877913 ctaagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagaga 54877843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 22288625 - 22288557
Alignment:
Q  23 actcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacc 91  Q
    |||||||||  || || |||||| ||||||||||||  | |||||||||| |||||||| |||||||||    
T  22288625 actcaaatgtacgacaagttctcactaagagttttagcactgttgcatgttcaaagctgaattcgaacc 22288557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 423761 - 423637
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||||| |||||| || || |||||||||||||   ||  ||||| |||| ||||||||| ||||||| ||||||||||| ||||||||||||     
T  423761 ggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatct 423662  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||||||| ||||||||    
T  423661 gttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 21910305 - 21910182
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcca 126  Q
    ||||| |||||||  |||| |||||||||||||   ||||||||| |||| |||||||||||||||| || ||||||||||||||||||||   ||| ||    
T  21910305 aaatgagcggcagactctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttca 21910206  T
Q  127 tctcatctaaacgctcttgtgtac 150  Q
    ||||||||||||||||||| ||||    
T  21910205 tctcatctaaacgctcttgggtac 21910182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 278476 - 278374
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgct 141  Q
    ||||| ||||||||||||| | |||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||  |||  |||||||||||||||||    
T  278476 tctccataagagttttaatgt-gttgcatgcccaaagctggattcaaactcaagaccttagttaagctagaagagactcgtgtcatctcatctaaacgct 278378  T
Q  142 cttg 145  Q
    ||||    
T  278377 cttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 12411254 - 12411139
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    ||||| |||||||||||||  ||| ||||||||||||||   || |||||| |||| ||||||||||||| || ||||||||||||| ||||||||| |     
T  12411254 ggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacct 12411155  T
Q  121 gttccatctcatctaa 136  Q
    ||||||||||||||||    
T  12411154 gttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 21029063 - 21029136
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||    
T  21029063 tgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagacccgtgccatctcatataaacg 21029136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 31107532 - 31107648
Alignment:
Q  25 tcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttc 124  Q
    |||||||| ||| | | |||||| |||||||||||   |||||||||||||| ||||||||||||| ||  ||||| |||||| ||||||||| || ||     
T  31107532 tcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccattt 31107631  T
Q  125 catctcatctaaacgct 141  Q
    |||||||||||||||||    
T  31107632 catctcatctaaacgct 31107648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 25084119 - 25084044
Alignment:
Q  42 tctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||||||||||| |||| |||||||||||  ||| |||||||| |||||| ||| |||||||||||||||    
T  25084119 tctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagaga 25084044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 31412223 - 31412105
Alignment:
Q  26 caaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttcc 125  Q
    ||||||||||||||  |||||||||||||||||| | || |||| | ||||||||| ||||| | ||| |||||| ||||| |||  ||||| |||||||    
T  31412223 caaatgggcggcagactctccctaagagttttaacactgctgcacgcccaaagctgaattcg-atccatgaccttagttaaactatgagagacccgttcc 31412125  T
Q  126 atctcatctaaacgctcttg 145  Q
    |||||||||||  |||||||    
T  31412124 atctcatctaagtgctcttg 31412105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 28099347 - 28099253
Alignment:
Q  23 actcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    |||||||||| || ||  |||||||||| |||||||| | || |||||| |||| |||||||||||||||| |||||| |||||| |||||||||    
T  28099347 actcaaatggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagaga 28099253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 8507109 - 8507202
Alignment:
Q  52 agttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||  ||||| ||||| ||| |||| |||||||||||| |||||  ||||||||||||| ||| ||  |||||||||||||||||||||    
T  8507109 agttttaacgttgttacatgttcaatgctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctcttg 8507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 15614608 - 15614732
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    |||||||||| || || | ||||| || || ||||||||  ||| | |||||||||  ||| ||||||||||| ||| ||||||||| |||||||||  |    
T  15614608 ggactcaaataggtggtaagttcttccgaaaagttttaacgttgctacatgtccaagactgaattcgaacccatgacattggttaagttagaagagactc 15614707  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    |||||||||||| ||| ||||||||    
T  15614708 gttccatctcatataagcgctcttg 15614732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 26477734 - 26477858
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatcc 120  Q
    ||||| ||||||| ||||   ||||||||||| ||||||  ||| ||||| ||| | ||||||||| ||  ||||| ||||||||||||| || ||||||    
T  26477734 ggacttaaatgggtggcaaactctccctaagaattttaacgttgctgcatttccgaggctggattcaaattcaagatcttggttaagctaaaatagatcc 26477833  T
Q  121 gttccatctcatctaaacgctcttg 145  Q
    ||  |||||||| ||| ||||||||    
T  26477834 gtgtcatctcatttaagcgctcttg 26477858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 29185379 - 29185307
Alignment:
Q  41 ttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaa 113  Q
    |||||||||||||||||||  ||| |||||||| || |||||||||||||| |  ||||| ||||| ||||||    
T  29185379 ttctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaa 29185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 5944942 - 5944847
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgt 122  Q
    ||||||||||||   ||||||||| |||||||| | |||| |||||| ||  ||| |||||||| || ||||||||||||| || |||||| ||||    
T  5944942 aaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaagagacccgt 5944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 3238002 - 3237908
Alignment:
Q  45 ccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacg 139  Q
    ||||||||||||||| |||  || |||| ||| |||||||||||||| | || |||||||||  |||||||||  | |  |||||||||||||||    
T  3238002 ccctaagagttttaacattactgaatgttcaaggctggattcgaaccaaggatcttggttaaattagaagagacacatatcatctcatctaaacg 3237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 7468600 - 7468698
Alignment:
Q  46 cctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctctt 144  Q
    ||||||||||||| |  || |||||| ||||| |||| ||| ||| || ||||||| ||||| |||| ||||||  |  ||||||||||||||||||||    
T  7468600 cctaagagttttactgctgctgcatgcccaaaactggtttcaaactcaggaccttgattaaggtagaggagatcaataacatctcatctaaacgctctt 7468698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 9433202 - 9433267
Alignment:
Q  52 agttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagaga 117  Q
    ||||||||  ||||||||| ||||||| ||||||||||||||  || || |||||| |||||||||    
T  9433202 agttttaacgttgttgcatatccaaaggtggattcgaacccagaactttagttaagatagaagaga 9433267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 27432221 - 27432176
Alignment:
Q  100 tggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  27432221 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttg 27432176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 31868636 - 31868681
Alignment:
Q  45 ccctaagagttttaatattgttgcatgtccaaagctggattcgaac 90  Q
    ||||||||||||||| ||||||| |||||||| | |||||||||||    
T  31868636 ccctaagagttttaacattgttgtatgtccaaggttggattcgaac 31868681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 12836932 - 12837004
Alignment:
Q  21 ggactcaaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaaccca 93  Q
    |||| ||||||||||||  | ||||||||||||||||||   || |||||| | || ||||||||||||||||    
T  12836932 ggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaaccca 12837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 167914 - 167837
Alignment:
Q  66 tgcatgtccaaagctggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    |||||| |||| |||||||| ||||||  ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||    
T  167914 tgcatgcccaaggctggatttgaaccc--gaccttgattaagctagaagagacccgtttcatctcatctaagcgctcttg 167837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 32358 - 32421
Alignment:
Q  80 tggattcgaacccaagaccttggttaagctagaagagatccgttccatctcatctaaacgctct 143  Q
    ||||||||||||||  |||||||| ||||||||||||| ||||||||||| ||||||| |||||    
T  32358 tggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatgctct 32421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 11052 - 10973
Alignment:
Q  27 aaatgggcggcaggttctccctaagagttttaatattgttgcatgtccaaagctggattcgaacccaagaccttggttaa 106  Q
    ||||||||||||   ||||| |||||||||||| ||||||||||| |||||  |||||||||||| | |||||| |||||    
T  11052 aaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaacctaggaccttagttaa 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 36255 - 36210
Alignment:
Q  100 tggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  36255 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttg 36210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 162524 - 162569
Alignment:
Q  100 tggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  162524 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttg 162569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 55142 - 55187
Alignment:
Q  100 tggttaagctagaagagatccgttccatctcatctaaacgctcttg 145  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||    
T  55142 tggttaagctagaagagactcgtgtcatctcatctaaacgctcttg 55187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University