View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_3 (Length: 434)
Name: NF1718_low_3
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 183 - 428
Target Start/End: Original strand, 35493523 - 35493768
Alignment:
| Q |
183 |
atatacaatttcatttcaacgtagcatgtcaatgtgaatgattgtcaaaataatgaaagaagacaaacaaaagatttcaaacagaaataaacaaactcca |
282 |
Q |
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| T |
35493523 |
atatacaatttcatttcaacgtagcatgtcaatgtgaatgattgtcaaactaatgaaagaagacaaacaaaagatttcaaacagaaataaacaaactcca |
35493622 |
T |
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| Q |
283 |
tgcaaaccatgcttcacgtctcactatcaagcatcagccacacactcagacacttccaaccaatttgttccgtgatggatatactttcatttggtcaagc |
382 |
Q |
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| T |
35493623 |
tgcaaaccatgcttcacgtctcactatcaagcatcagccacacactcagacacttccaaccaatttgttccgtgatggatatactttcatttggtcaagc |
35493722 |
T |
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| Q |
383 |
atgtttgtatatgatttatttttcgttcataatatctacacgtttt |
428 |
Q |
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| T |
35493723 |
atgtttgtatatgatttatttttcgttcataatatctacacgtttt |
35493768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 35493349 - 35493446
Alignment:
| Q |
13 |
aatatactaggaaatcaaattagtatactataaattaaaatgcatacacattataatgttcaattggtaaatcatagctataaaatttgaattgtacc |
110 |
Q |
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| T |
35493349 |
aatatactaggaaatcaaattagtatactataaattaaaatgcatacacattataatgttcaattggtaaatcatagctataaaatttgaattgtacc |
35493446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 35483905 - 35483992
Alignment:
| Q |
23 |
gaaatcaaattagtatactataaattaaaatgcatacacattataatgttcaattggtaaatcatagctataaaatttgaattgtacc |
110 |
Q |
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| T |
35483905 |
gaaatcaaatcaatatactataaattaaaatgcatacacgttataatgttcaattgatcaatcatagagataaaatttgaattgtacc |
35483992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 35484026 - 35484117
Alignment:
| Q |
176 |
ataggacatatacaatttcatttcaacgtagcatgtcaatgtgaatgattgtcaaaataatgaaagaagacaaacaaaagatttcaaacagaaa |
269 |
Q |
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| T |
35484026 |
atagtacaaatacagtttcatttcaacgtagcatgccaatgtgaatgatcgtcgaaataatgaaagaagacaa--caaatatttcaaacagaaa |
35484117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 35484139 - 35484181
Alignment:
| Q |
315 |
atcagccacacactcagacacttccaaccaatttgttccgtga |
357 |
Q |
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| T |
35484139 |
atcaaccacacactcagacacttccatccaatttgttccgtga |
35484181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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