View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_5 (Length: 422)
Name: NF1718_low_5
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 53088674 - 53088533
Alignment:
| Q |
7 |
tcgaataaaataaacatggaaaatcaaaatcacttatgagttaaaatcatttccattttatattctctaatttctctctgttagtactatag-tttggaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
53088674 |
tcgaataaaataaacatggaaaatcaaaatcacttatgagttgaaatcatttccattttatattctctaatttctctctgttagtactattgttttggaa |
53088575 |
T |
|
| Q |
106 |
atctagatacctaatatatattctacaccttgacaaagaaat |
147 |
Q |
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| T |
53088574 |
atctagatacctaatatatattctacaccttgacaaagaaat |
53088533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 205 - 405
Target Start/End: Complemental strand, 53088533 - 53088324
Alignment:
| Q |
205 |
ttaatgaactaatgaaaatggaaagatagagagaaaatgaagtgttaaatgaa--tgta-gataattaaagacacttataatgatagtaatctaaaaaga |
301 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53088533 |
ttaatgaactaatgaaaatttaaagatagagagaaaatgatgtgttaaatgaaaatgtatgataattaaagacacttataatgatagtaatctaaaaaga |
53088434 |
T |
|
| Q |
302 |
gacattaaatgg----------aatatcacttatttataattgttaatgaaaatatcaattacgtaataatcaatgactcaagttataataaaccaaaaa |
391 |
Q |
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| T |
53088433 |
gacattaaatggatcacatataaacatcacttatttataattgttaatgaaaatatcaat----taataatcaatgactcaagtaataataaaccaaaaa |
53088338 |
T |
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| Q |
392 |
tagtccttaaatag |
405 |
Q |
| |
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|||||||||||||| |
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| T |
53088337 |
tagtccttaaatag |
53088324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 14333413 - 14333264
Alignment:
| Q |
6 |
gtcgaataaaataaacatggaaaatcaaaatcacttatgagttaaaatcatttccattttatatt-ctctaatttctctctgttagtactatagtttg-g |
103 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| | | || ||||||||||||||||||||||||||||||| | |
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| T |
14333413 |
gtcgaataaaataaacatg-aaaatcaaaatcacttgtgagttaaaatcatatccattctctttttctctaatttctctctgttagtactatagttttag |
14333315 |
T |
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| Q |
104 |
aaatctagatacctaatatatattctacaccttgacaaagaaataaataaa |
154 |
Q |
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||||||||| |||||||||||||||||||| | |||||||||| ||||||| |
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| T |
14333314 |
aaatctagacacctaatatatattctacacatcgacaaagaaagaaataaa |
14333264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 314
Target Start/End: Complemental strand, 14333244 - 14333109
Alignment:
| Q |
191 |
ataaatgtgatatgttaatgaactaatgaaaatggaaagatagagagaaaatgaagtgttaaatgaatgta-gataattaaagacac--------ttata |
281 |
Q |
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||||||| ||||| ||| |||||||||| |||| ||||||||| || |||| || |||||||||||||||| ||||||||||||| | ||| | |
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| T |
14333244 |
ataaatgcgatatattagtgaactaatggaaatagaaagatagtgataaaaggatgtgttaaatgaatgtatgataattaaagacgcataagcatttaca |
14333145 |
T |
|
| Q |
282 |
atgata---gtaatctaaaaagagacattaaatgga |
314 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
14333144 |
atgatactagtaatctaaaaagagacattaaatgga |
14333109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 21549939 - 21549905
Alignment:
| Q |
226 |
aaagatagagagaaaatgaagtgttaaatgaatgt |
260 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
21549939 |
aaagatagagagaaaatgaagtgttgaatgaatgt |
21549905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 7566411 - 7566443
Alignment:
| Q |
228 |
agatagagagaaaatgaagtgttaaatgaatgt |
260 |
Q |
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| T |
7566411 |
agatagagagaaaatgaagtgttaaataaatgt |
7566443 |
T |
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