View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1718_low_7 (Length: 407)
Name: NF1718_low_7
Description: NF1718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1718_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 30212235 - 30212629
Alignment:
| Q |
1 |
ttttagttaaatagacttctaaaattttttggtcttctctatttnnnnnnngcttagcataaccttgatccgatgtagtctatagacctatgtcggtcga |
100 |
Q |
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| T |
30212235 |
ttttagttaaatagacttctaaaaagttttgatcttctctatttaaaaaaagcttagtataaccttgatccgatgtagtctatagaccaatgtcggtcga |
30212334 |
T |
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| Q |
101 |
tatggcctattatacacccatatttatcaatatgtgaaaacaattttgttaattttaaaattaccacgtttcttaactttttctaaacaaaaaagaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30212335 |
tatggcctattatacacccatatttatcaatatgtgaaaacaattttgttaattttaaaattatcacgtttcttaactttttctaaacaaaaaagaattt |
30212434 |
T |
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| Q |
201 |
ggagttaaagataaaagtactaggtagatccttc--nnnnnnnnnnnnnngtactaggtagagtcacataaatctacatgggtttggaaagtaataatgc |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30212435 |
ggagttaaagataaaagtactaggtagatccttcaaaaaaaaaaaaaaaagtactaggtagagtcacataaatctacatgtgtttggaaagtaataatgc |
30212534 |
T |
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| Q |
299 |
tatctctctgcgaatatgtgtttatactccttgtctgaccttttgcaattcaaatttaaaacaagaccaaagagaaatgactcatcatgatcttg |
393 |
Q |
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| T |
30212535 |
tatctctctgcgaatatgtgtttatactccttgtctgaccttttgcaattcaaatttaaaacaagaccaaagagaaatgactcatcatgatcttg |
30212629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 19808313 - 19808368
Alignment:
| Q |
325 |
ctccttgtctgaccttttgcaattcaaatttaaaacaagaccaaagagaaatgact |
380 |
Q |
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| T |
19808313 |
ctccttgactgaccttttgcaatatgaatttaaaacaaaaccaaagagaaatgact |
19808368 |
T |
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