View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719-Insertion-1 (Length: 576)
Name: NF1719-Insertion-1
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 52443976 - 52443396
Alignment:
| Q |
8 |
ctaatcactattatcctaaatgcatgcgagtatatattgatttaacaatgatgaaactagtataaattagatggtagaattgnnnnnnnntaa------g |
101 |
Q |
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| T |
52443976 |
ctaatcactattaccctaaatgtatgtgagtatatattgatttaacaatgatgaaactagtataaattagatggtagaattgaaagaaaaaaaaaagaag |
52443877 |
T |
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| Q |
102 |
taattatgggtgatggtgattatgctgggttctttttcaatttggattcaattagctggcttaagttgggtttgtctggcatcaccagtatttctgacta |
201 |
Q |
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| T |
52443876 |
taattatgggtaatggtgattatgctgggttctttttcaatttggattcaattagctggcttaagtggggtttgtctaacatcaccagtatttctgacta |
52443777 |
T |
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| Q |
202 |
cattggtaacaatgattatgttgagttatttgaaaaaattcaatatttttgcaacaggcatttagtgggcttggcgtaatcgtaattcttctagcatcac |
301 |
Q |
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| T |
52443776 |
cattggtaacggtgattatgttgagttatttgaaaaaattcagtatttttgcaacaggcatttagtgggcttggcgtaatcgcaattcttctagcatcac |
52443677 |
T |
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| Q |
302 |
caatgtagcaatcccacaataccaccttatgatcgaaccccataatacgacttctacattcatccccttgcttccccgattatctttgggcaagccattg |
401 |
Q |
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| T |
52443676 |
caatgtagcaatcccataataccaccttatgatcgaaccccataatacgacttatacatttatccccttgcttccccgattatctttgggcaagccattg |
52443577 |
T |
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| Q |
402 |
ttgaactccatgcaatagatctagtgcttttgttggctaaacaattgaataaccattacttgttacacataatctcttcactgtgttgataccctccatt |
501 |
Q |
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| T |
52443576 |
ttgaactccatgcaatagatcaagtgcttttgttggctaaacaattgaatcaccattacttgttacacataatctcttcactatgttgataccctccatt |
52443477 |
T |
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| Q |
502 |
tttaaataccaagatttcgcaaatatgtcactttgatcgaagacat------cctccttcatcaaaatcgacatgttcata |
576 |
Q |
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| T |
52443476 |
tttaaataccaagatttcgcaaatatgtcactttgatcgaagacatcaaagacctcctccatcaaaatcgacatgttcata |
52443396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 37304434 - 37304387
Alignment:
| Q |
410 |
catgcaatagatctagtgcttttgttggctaaacaattgaataaccat |
457 |
Q |
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| T |
37304434 |
catgcaatacatcaagggcttttgttggctaaacaattgaataaccat |
37304387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 544
Target Start/End: Original strand, 12299995 - 12300083
Alignment:
| Q |
456 |
attacttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaaga |
544 |
Q |
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| T |
12299995 |
attacttgttacacagattttcttcattgtgttgatatcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaaga |
12300083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 548
Target Start/End: Original strand, 35797954 - 35798042
Alignment:
| Q |
460 |
cttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatc |
548 |
Q |
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| T |
35797954 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatc |
35798042 |
T |
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